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The map label for this gene is atpC

Identifier: 119386526

GI number: 119386526

Start: 959291

End: 959737

Strand: Direct

Name: atpC

Synonym: Pden_3819

Alternate gene names: 119386526

Gene position: 959291-959737 (Clockwise)

Preceding gene: 119386525

Following gene: 119386527

Centisome position: 55.45

GC content: 67.34

Gene sequence:

>447_bases
ATGGCCGACACGATGCAGTTCGACCTCGTCTCGCCGGAACGGAACCTGGTTTCCGTCCCGGTGCGCGAGGTGCGCCTGCC
CGGCGCCGATGGCGACCTGACGGCGATGCCCGGCCATGCGCCGGCCATCGTCAACCTGCGCCCCGGTCTGGTGACCGTGG
TGGCTGGGGACGGGTCCGAGACGGAATTCGCGGTGACCGGCGGTTTCGCCGAGATCAACAACGAATCCGTCACCCTGCTG
GCCGAACGCGGACATCCCCGCGCCGAGATGACGCAAGAGGTCTTCAACGAGATGATGGCCCAGGCCCGTCGTCGCGTCGA
AGCCGCCAAGGAGCGCGAATCCGCCGGAGAGGAGCTGGTCGCCGCCGCGGTCAAGCTGCTGGCCGACATGGAGGCGCTTG
GCACGCATATCGGGCTCGATCCGAACCATGCGAATTTCCCGCATTAG

Upstream 100 bases:

>100_bases
CGACCACCTGCCGGAAGCGGCCTTCTACATGGTCGGCGGCATCGAGGATGTGAAAGCCAAGGCTCAGCGTCTCGCCGCTG
ACGCGGCGTAAGGGGGCGAC

Downstream 100 bases:

>100_bases
GCGGGATCTGTCCAGAAGATAGAAAGCCCCGGTTTTTCCGGGGCTTTATTCATTCGCCGTCGTGGCATTTCGTGATGCGC
GGGAGGAGCGTGAATTGCGA

Product: ATP synthase F1, epsilon subunit

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F1 sector epsilon subunit; F-ATPase epsilon subunit

Number of amino acids: Translated: 148; Mature: 147

Protein sequence:

>148_residues
MADTMQFDLVSPERNLVSVPVREVRLPGADGDLTAMPGHAPAIVNLRPGLVTVVAGDGSETEFAVTGGFAEINNESVTLL
AERGHPRAEMTQEVFNEMMAQARRRVEAAKERESAGEELVAAAVKLLADMEALGTHIGLDPNHANFPH

Sequences:

>Translated_148_residues
MADTMQFDLVSPERNLVSVPVREVRLPGADGDLTAMPGHAPAIVNLRPGLVTVVAGDGSETEFAVTGGFAEINNESVTLL
AERGHPRAEMTQEVFNEMMAQARRRVEAAKERESAGEELVAAAVKLLADMEALGTHIGLDPNHANFPH
>Mature_147_residues
ADTMQFDLVSPERNLVSVPVREVRLPGADGDLTAMPGHAPAIVNLRPGLVTVVAGDGSETEFAVTGGFAEINNESVTLLA
ERGHPRAEMTQEVFNEMMAQARRRVEAAKERESAGEELVAAAVKLLADMEALGTHIGLDPNHANFPH

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane

COG id: COG0355

COG function: function code C; F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit)

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase epsilon chain family

Homologues:

Organism=Escherichia coli, GI1790169, Length=82, Percent_Identity=35.3658536585366, Blast_Score=64, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPE_PARDP (A1B8P1)

Other databases:

- EMBL:   CP000490
- RefSeq:   YP_917581.1
- ProteinModelPortal:   A1B8P1
- SMR:   A1B8P1
- STRING:   A1B8P1
- GeneID:   4582370
- GenomeReviews:   CP000490_GR
- KEGG:   pde:Pden_3819
- eggNOG:   COG0355
- HOGENOM:   HBG663981
- OMA:   HAPTMTT
- PhylomeDB:   A1B8P1
- ProtClustDB:   CLSK2783221
- HAMAP:   MF_00530
- InterPro:   IPR001469
- InterPro:   IPR020546
- Gene3D:   G3DSA:2.60.15.10
- PANTHER:   PTHR13822
- ProDom:   PD000944
- TIGRFAMs:   TIGR01216

Pfam domain/function: PF02823 ATP-synt_DE_N; SSF51344 ATPsynt_DE

EC number: 3.6.3.14

Molecular weight: Translated: 15824; Mature: 15693

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADTMQFDLVSPERNLVSVPVREVRLPGADGDLTAMPGHAPAIVNLRPGLVTVVAGDGSE
CCCCCEEEEECCCCCEEECCHHHEECCCCCCCEEECCCCCCEEEEECCCEEEEEECCCCC
TEFAVTGGFAEINNESVTLLAERGHPRAEMTQEVFNEMMAQARRRVEAAKERESAGEELV
CEEEEECCEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAAVKLLADMEALGTHIGLDPNHANFPH
HHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
ADTMQFDLVSPERNLVSVPVREVRLPGADGDLTAMPGHAPAIVNLRPGLVTVVAGDGSE
CCCCEEEEECCCCCEEECCHHHEECCCCCCCEEECCCCCCEEEEECCCEEEEEECCCCC
TEFAVTGGFAEINNESVTLLAERGHPRAEMTQEVFNEMMAQARRRVEAAKERESAGEELV
CEEEEECCEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAAVKLLADMEALGTHIGLDPNHANFPH
HHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA