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The map label for this gene is yjbJ [H]

Identifier: 119386514

GI number: 119386514

Start: 943514

End: 944161

Strand: Direct

Name: yjbJ [H]

Synonym: Pden_3807

Alternate gene names: 119386514

Gene position: 943514-944161 (Clockwise)

Preceding gene: 119386512

Following gene: 119386517

Centisome position: 54.54

GC content: 68.67

Gene sequence:

>648_bases
ATGCTTTCACGCGATCAGGCGATGCTGCGCCGGTTGGGCCGGGCCGTAATGGCCCTGACGCTTTCGGCTGGGCTGGCTGC
GCCCGCTGCGGCCGAAGGGCTGCGGCTGCAGGTGAAAAGCGGCAAGTCGCGACAGGCGCAGTTCGAGCGCCAGACCCGGC
TGATGGATTCGCGCCTGGCCGGGCAATACCAGCAATCGGCCCGGCTGCGCCCGGGCGGCACTTCGACCAAGAGCGTGGTC
GAGCTGGACCTGCCCACAGCCGTGCCCGCCTATAACGGCAACCGGCGCAGCCAGTATCTGCCCCATGCCCGCGCCATGGC
CCGCAAGCATGGCGTCCCCGAGGATCTGTTCCTGCGCCTCGTGCAGCAGGAATCGGGCTGGAACCCGTCGGCACGCTCGC
ACAAGGGCGCGCGCGGGCTGGCGCAGCTGATGCCTGGCACCGCTGCCAAGCTGGGCGTCGATCCGAACGACCCGATCCAG
AACCTGGAAGGCGGCGCGCGTTATCTGCGCATGATGTACAACACCTTCGGCAACTGGCGGCTGGCGCTGGCGGCCTATAA
TGCCGGTCCGGGGGCGGTGGCGAAATACGGCGGCGTGCCGCCCTATCGCGAGACGCGCAACTACGTCCGCATCATCCACG
GCAGCTGA

Upstream 100 bases:

>100_bases
TCCGTTGCTGCGCGCGCCGTGAAATCCTCTTGCGGCGCCGGCCCGGCTTTGCGCTATAGTGCCGCACAAAAAAGACAACG
CCATGCATGAGGGACCAGTA

Downstream 100 bases:

>100_bases
AACGAAAAAGGCCGGGCAGGGCGCCCGGCCTTTTCGATTTTCGTCCCTCGGAAGGTCGAGCCTCAGAAGGTCGAGGGGAT
GATGCGGGTGTATTTCGTCC

Product: lytic transglycosylase, catalytic

Products: 1,6-Anhydrobond [C]

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MLSRDQAMLRRLGRAVMALTLSAGLAAPAAAEGLRLQVKSGKSRQAQFERQTRLMDSRLAGQYQQSARLRPGGTSTKSVV
ELDLPTAVPAYNGNRRSQYLPHARAMARKHGVPEDLFLRLVQQESGWNPSARSHKGARGLAQLMPGTAAKLGVDPNDPIQ
NLEGGARYLRMMYNTFGNWRLALAAYNAGPGAVAKYGGVPPYRETRNYVRIIHGS

Sequences:

>Translated_215_residues
MLSRDQAMLRRLGRAVMALTLSAGLAAPAAAEGLRLQVKSGKSRQAQFERQTRLMDSRLAGQYQQSARLRPGGTSTKSVV
ELDLPTAVPAYNGNRRSQYLPHARAMARKHGVPEDLFLRLVQQESGWNPSARSHKGARGLAQLMPGTAAKLGVDPNDPIQ
NLEGGARYLRMMYNTFGNWRLALAAYNAGPGAVAKYGGVPPYRETRNYVRIIHGS
>Mature_215_residues
MLSRDQAMLRRLGRAVMALTLSAGLAAPAAAEGLRLQVKSGKSRQAQFERQTRLMDSRLAGQYQQSARLRPGGTSTKSVV
ELDLPTAVPAYNGNRRSQYLPHARAMARKHGVPEDLFLRLVQQESGWNPSARSHKGARGLAQLMPGTAAKLGVDPNDPIQ
NLEGGARYLRMMYNTFGNWRLALAAYNAGPGAVAKYGGVPPYRETRNYVRIIHGS

Specific function: Murein-Degrading Enzyme. Catalyzes The Cleavage Of The Glycosidic Bonds Between N-Acetylmuramic Acid And N- Acetylglucosamine Residues In Peptidoglycan. May Play A Role In Recycling Of Muropeptides During Cell Elongation And/Or Cell Division. [C]

COG id: COG0741

COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)

Gene ontology:

Cell location: Periplasmic Protein. Tightly Associated With The Murein Sacculus [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transglycosylase slt family [H]

Homologues:

Organism=Escherichia coli, GI87082441, Length=126, Percent_Identity=37.3015873015873, Blast_Score=73, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008258
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01464 SLT [H]

EC number: 3.2.1.- [C]

Molecular weight: Translated: 23497; Mature: 23497

Theoretical pI: Translated: 11.54; Mature: 11.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSRDQAMLRRLGRAVMALTLSAGLAAPAAAEGLRLQVKSGKSRQAQFERQTRLMDSRLA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
GQYQQSARLRPGGTSTKSVVELDLPTAVPAYNGNRRSQYLPHARAMARKHGVPEDLFLRL
HHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHCCCCHHHHHHH
VQQESGWNPSARSHKGARGLAQLMPGTAAKLGVDPNDPIQNLEGGARYLRMMYNTFGNWR
HHHHCCCCCCCCCCCCHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEE
LALAAYNAGPGAVAKYGGVPPYRETRNYVRIIHGS
EEEEEECCCCCCHHHCCCCCCHHHCCCEEEEEECC
>Mature Secondary Structure
MLSRDQAMLRRLGRAVMALTLSAGLAAPAAAEGLRLQVKSGKSRQAQFERQTRLMDSRLA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
GQYQQSARLRPGGTSTKSVVELDLPTAVPAYNGNRRSQYLPHARAMARKHGVPEDLFLRL
HHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHCCCCHHHHHHH
VQQESGWNPSARSHKGARGLAQLMPGTAAKLGVDPNDPIQNLEGGARYLRMMYNTFGNWR
HHHHCCCCCCCCCCCCHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEE
LALAAYNAGPGAVAKYGGVPPYRETRNYVRIIHGS
EEEEEECCCCCCHHHCCCCCCHHHCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]

Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]

General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]