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The map label for this gene is cspE [C]

Identifier: 119386361

GI number: 119386361

Start: 802948

End: 803190

Strand: Direct

Name: cspE [C]

Synonym: Pden_3653

Alternate gene names: 119386361

Gene position: 802948-803190 (Clockwise)

Preceding gene: 119386360

Following gene: 119386363

Centisome position: 46.41

GC content: 61.32

Gene sequence:

>243_bases
ATGTCGTGGGCGACATCATCTGAAGGAGATATCACGATGGCCAATGGCACCGTGAAATGGTTCAACGCCACCAAAGGCTT
CGGTTTCATCGCCCCCGCGAACGGCGGCAAGGATGTGTTCGTGCACATCTCGGCGCTGGAAAGGGCCAATATCAGCCACC
TCGCTGACGGCCAGGCCGTGAGCTTCGAAATCGAGACCGGCCGCGACGGCCGTCAATCGGCGCGCGATCTGGCGCTGGCC
TGA

Upstream 100 bases:

>100_bases
CCGAGCTGCCCCATCTTGCGGGGGCTACGTTATTTCTTCGCATCCTGTCTCCTTCCCGGCTTCAGACTGTGTTTCGATCT
GACTAGGCCGGGTCGCCGCA

Downstream 100 bases:

>100_bases
TTTCGACAGCAGGTCCGACCGATCCTGGTCGGACCTATCCCTTCCCGGAGGTCCGCATGGCACCCAAGGACAGGCTGAAG
GAACTTTTTCGCGCGCCGGC

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 80; Mature: 79

Protein sequence:

>80_residues
MSWATSSEGDITMANGTVKWFNATKGFGFIAPANGGKDVFVHISALERANISHLADGQAVSFEIETGRDGRQSARDLALA

Sequences:

>Translated_80_residues
MSWATSSEGDITMANGTVKWFNATKGFGFIAPANGGKDVFVHISALERANISHLADGQAVSFEIETGRDGRQSARDLALA
>Mature_79_residues
SWATSSEGDITMANGTVKWFNATKGFGFIAPANGGKDVFVHISALERANISHLADGQAVSFEIETGRDGRQSARDLALA

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=54.6875, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1787839, Length=59, Percent_Identity=57.6271186440678, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=53.125, Blast_Score=72, Evalue=5e-15,
Organism=Escherichia coli, GI1789979, Length=55, Percent_Identity=60, Blast_Score=70, Evalue=2e-14,
Organism=Escherichia coli, GI1787834, Length=64, Percent_Identity=50, Blast_Score=69, Evalue=7e-14,
Organism=Escherichia coli, GI2367114, Length=64, Percent_Identity=50, Blast_Score=68, Evalue=1e-13,
Organism=Escherichia coli, GI1787107, Length=62, Percent_Identity=45.1612903225806, Blast_Score=65, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 8470; Mature: 8339

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSWATSSEGDITMANGTVKWFNATKGFGFIAPANGGKDVFVHISALERANISHLADGQAV
CCCCCCCCCCEEEECCEEEEEECCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCEE
SFEIETGRDGRQSARDLALA
EEEEECCCCCCCCCHHCCCC
>Mature Secondary Structure 
SWATSSEGDITMANGTVKWFNATKGFGFIAPANGGKDVFVHISALERANISHLADGQAV
CCCCCCCCCEEEECCEEEEEECCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCEE
SFEIETGRDGRQSARDLALA
EEEEECCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]