| Definition | Paracoccus denitrificans PD1222 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_008687 |
| Length | 1,730,097 |
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The map label for this gene is gno [H]
Identifier: 119386289
GI number: 119386289
Start: 732596
End: 733354
Strand: Direct
Name: gno [H]
Synonym: Pden_3580
Alternate gene names: 119386289
Gene position: 732596-733354 (Clockwise)
Preceding gene: 119386288
Following gene: 119386292
Centisome position: 42.34
GC content: 65.88
Gene sequence:
>759_bases ATGACCCCGCTTCCCGATTTCTCGTTGAAGGGCAGGGTCGCGCTGGTCACCGGCGCCGGTCGCGGCATCGGGCGCGCCAT CGCCGAGGTCTATGCACAGGCGGGGGCCGAGGTCGTCCTTTGTGCCCGCAGCCGGACCGAGATCGCGGAAGTCGCCCAGG CGCTGGTCGAGCAAGGCTTCAAGGCTCGCGCCATCCCCTGCGACGTGACCGATGTCGCGGATTTCCGCGCGCTGGCCGAT GGGTTGGAACGCCTGGACATCTTCGTCAACAACGCCGGCACCAATCGCCCGCGCCCGCTGGTCGATGTCACCGAAGAGGA TTTCGACGTCATCGCCGGGCTGAACCTGCGCGCAGCCTTCTTTGCGTTGCAAAGCGTGGCGCGGCGGATGCGCGACCTGG GGCGGGGTGGGTCGATCATCAACATGTCCTCGCAGATGGGGCATATCGGCGCGGCGGATCGCTCGGTCTATTGCGCGACG AAATGGGGGATCGAGGGGCTGACCAAGGCCAGCGCCATCGAGCTTTCGCCTTTCCGCATCCGCGTGAACACGATCTGCCC CACCTTCATCGAGACGCCGCTTACCAGGCCCTATTTCGATGATCCTGCCTTCCGCGAGCATTGCCTGCGCATGATCAAGC TGGGCCGCGTGGGGCAGGTGGGCGATATCGTCGGTGCGGCGCTTTACCTGGCATCCGATGCGTCGGCCCTGATGACCGGC AGCGCCGTGATCCTGGATGGCGGCTGGACGGCCGAATAA
Upstream 100 bases:
>100_bases GCCTGTGCATGATCGAGGGCTTTGTCGGCCATGCCGAACAGGCCAATATCCGCGTGCGCCGCTATGGTGGCGACAACATT CCCTATGGCGAGGCCGCCCA
Downstream 100 bases:
>100_bases CCGCCGCCCAGGGGGCTGGCTATCTTGGGCATTATCCCGCGGCTCGGGACGAGTGCGGAGATGCGCTGCGCTGGCCGGCC GACAAAGGCCCGCTAGCGAA
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: 5-keto-D-gluconate 5-reductase [H]
Number of amino acids: Translated: 252; Mature: 251
Protein sequence:
>252_residues MTPLPDFSLKGRVALVTGAGRGIGRAIAEVYAQAGAEVVLCARSRTEIAEVAQALVEQGFKARAIPCDVTDVADFRALAD GLERLDIFVNNAGTNRPRPLVDVTEEDFDVIAGLNLRAAFFALQSVARRMRDLGRGGSIINMSSQMGHIGAADRSVYCAT KWGIEGLTKASAIELSPFRIRVNTICPTFIETPLTRPYFDDPAFREHCLRMIKLGRVGQVGDIVGAALYLASDASALMTG SAVILDGGWTAE
Sequences:
>Translated_252_residues MTPLPDFSLKGRVALVTGAGRGIGRAIAEVYAQAGAEVVLCARSRTEIAEVAQALVEQGFKARAIPCDVTDVADFRALAD GLERLDIFVNNAGTNRPRPLVDVTEEDFDVIAGLNLRAAFFALQSVARRMRDLGRGGSIINMSSQMGHIGAADRSVYCAT KWGIEGLTKASAIELSPFRIRVNTICPTFIETPLTRPYFDDPAFREHCLRMIKLGRVGQVGDIVGAALYLASDASALMTG SAVILDGGWTAE >Mature_251_residues TPLPDFSLKGRVALVTGAGRGIGRAIAEVYAQAGAEVVLCARSRTEIAEVAQALVEQGFKARAIPCDVTDVADFRALADG LERLDIFVNNAGTNRPRPLVDVTEEDFDVIAGLNLRAAFFALQSVARRMRDLGRGGSIINMSSQMGHIGAADRSVYCATK WGIEGLTKASAIELSPFRIRVNTICPTFIETPLTRPYFDDPAFREHCLRMIKLGRVGQVGDIVGAALYLASDASALMTGS AVILDGGWTAE
Specific function: Involved in the non-phosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate. Dependent on NADP, almost inactive with NAD [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7705925, Length=247, Percent_Identity=37.246963562753, Blast_Score=145, Evalue=4e-35, Organism=Homo sapiens, GI15277342, Length=252, Percent_Identity=32.9365079365079, Blast_Score=120, Evalue=1e-27, Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=33.3333333333333, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=33.8842975206612, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI66933014, Length=247, Percent_Identity=33.1983805668016, Blast_Score=113, Evalue=2e-25, Organism=Homo sapiens, GI31542939, Length=222, Percent_Identity=36.036036036036, Blast_Score=109, Evalue=2e-24, Organism=Homo sapiens, GI5031737, Length=247, Percent_Identity=30.3643724696356, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI59889578, Length=229, Percent_Identity=34.4978165938865, Blast_Score=95, Evalue=6e-20, Organism=Homo sapiens, GI224922801, Length=173, Percent_Identity=39.3063583815029, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI126723750, Length=248, Percent_Identity=29.0322580645161, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI19923817, Length=259, Percent_Identity=27.7992277992278, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI4504505, Length=188, Percent_Identity=34.5744680851064, Blast_Score=86, Evalue=2e-17, Organism=Homo sapiens, GI109715829, Length=243, Percent_Identity=29.6296296296296, Blast_Score=85, Evalue=5e-17, Organism=Homo sapiens, GI33667109, Length=196, Percent_Identity=33.6734693877551, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI10190704, Length=253, Percent_Identity=28.4584980237154, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI4503301, Length=251, Percent_Identity=25.4980079681275, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI126723191, Length=185, Percent_Identity=34.0540540540541, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI4758504, Length=202, Percent_Identity=35.1485148514851, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI210032110, Length=196, Percent_Identity=27.0408163265306, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI142976729, Length=192, Percent_Identity=26.0416666666667, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI7706318, Length=192, Percent_Identity=29.1666666666667, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI4503817, Length=203, Percent_Identity=26.6009852216749, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI7705855, Length=204, Percent_Identity=28.921568627451, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI40807363, Length=200, Percent_Identity=25.5, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI20149619, Length=203, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI4502601, Length=175, Percent_Identity=32, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI209862901, Length=216, Percent_Identity=26.8518518518519, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI19923983, Length=216, Percent_Identity=26.8518518518519, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=35.7723577235772, Blast_Score=132, Evalue=3e-32, Organism=Escherichia coli, GI1790717, Length=248, Percent_Identity=30.6451612903226, Blast_Score=131, Evalue=4e-32, Organism=Escherichia coli, GI1789208, Length=252, Percent_Identity=33.3333333333333, Blast_Score=130, Evalue=9e-32, Organism=Escherichia coli, GI87082160, Length=247, Percent_Identity=33.6032388663968, Blast_Score=126, Evalue=2e-30, Organism=Escherichia coli, GI1788459, Length=243, Percent_Identity=32.5102880658436, Blast_Score=121, Evalue=4e-29, Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=34.5098039215686, Blast_Score=115, Evalue=2e-27, Organism=Escherichia coli, GI1787905, Length=251, Percent_Identity=33.4661354581673, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=33.0612244897959, Blast_Score=101, Evalue=6e-23, Organism=Escherichia coli, GI1786812, Length=258, Percent_Identity=30.6201550387597, Blast_Score=93, Evalue=1e-20, Organism=Escherichia coli, GI1789378, Length=268, Percent_Identity=30.9701492537313, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI2367365, Length=252, Percent_Identity=29.7619047619048, Blast_Score=74, Evalue=6e-15, Organism=Escherichia coli, GI1789057, Length=253, Percent_Identity=26.0869565217391, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1787526, Length=242, Percent_Identity=28.5123966942149, Blast_Score=74, Evalue=1e-14, Organism=Caenorhabditis elegans, GI25147288, Length=247, Percent_Identity=34.0080971659919, Blast_Score=130, Evalue=5e-31, Organism=Caenorhabditis elegans, GI17555706, Length=244, Percent_Identity=33.1967213114754, Blast_Score=124, Evalue=3e-29, Organism=Caenorhabditis elegans, GI115534694, Length=252, Percent_Identity=30.952380952381, Blast_Score=121, Evalue=4e-28, Organism=Caenorhabditis elegans, GI17560676, Length=256, Percent_Identity=31.640625, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17561402, Length=252, Percent_Identity=32.9365079365079, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI71994600, Length=248, Percent_Identity=29.0322580645161, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI71994604, Length=247, Percent_Identity=29.1497975708502, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17560220, Length=262, Percent_Identity=31.2977099236641, Blast_Score=100, Evalue=7e-22, Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=30.5343511450382, Blast_Score=98, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17564282, Length=198, Percent_Identity=32.3232323232323, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17562904, Length=270, Percent_Identity=27.037037037037, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17562906, Length=269, Percent_Identity=28.6245353159851, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17562910, Length=269, Percent_Identity=28.2527881040892, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17531453, Length=265, Percent_Identity=28.3018867924528, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=28.6259541984733, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17559104, Length=262, Percent_Identity=27.4809160305344, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17536651, Length=258, Percent_Identity=26.7441860465116, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI193203115, Length=190, Percent_Identity=28.4210526315789, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI193203117, Length=192, Percent_Identity=28.125, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17536025, Length=258, Percent_Identity=27.1317829457364, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17551412, Length=263, Percent_Identity=28.1368821292776, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17544670, Length=275, Percent_Identity=27.6363636363636, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=25.0950570342205, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17538480, Length=269, Percent_Identity=27.8810408921933, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17538486, Length=267, Percent_Identity=26.5917602996255, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17562990, Length=267, Percent_Identity=25.8426966292135, Blast_Score=77, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17568967, Length=189, Percent_Identity=31.2169312169312, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17561272, Length=254, Percent_Identity=28.3464566929134, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17565030, Length=265, Percent_Identity=27.5471698113208, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17538182, Length=202, Percent_Identity=32.1782178217822, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71997099, Length=220, Percent_Identity=28.6363636363636, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17508895, Length=198, Percent_Identity=24.2424242424242, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17508651, Length=246, Percent_Identity=27.2357723577236, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17555612, Length=217, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17560332, Length=267, Percent_Identity=25.4681647940075, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71982365, Length=192, Percent_Identity=27.0833333333333, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI72000259, Length=264, Percent_Identity=23.1060606060606, Blast_Score=64, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=254, Percent_Identity=24.8031496062992, Blast_Score=81, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6322861, Length=250, Percent_Identity=28, Blast_Score=77, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6323882, Length=198, Percent_Identity=29.2929292929293, Blast_Score=67, Evalue=3e-12, Organism=Drosophila melanogaster, GI24643142, Length=245, Percent_Identity=37.1428571428571, Blast_Score=144, Evalue=6e-35, Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=34, Blast_Score=127, Evalue=7e-30, Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=33.3333333333333, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=29.4820717131474, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI21357041, Length=257, Percent_Identity=29.5719844357977, Blast_Score=99, Evalue=2e-21, Organism=Drosophila melanogaster, GI28571526, Length=253, Percent_Identity=30.4347826086957, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI281364892, Length=205, Percent_Identity=31.7073170731707, Blast_Score=91, Evalue=7e-19, Organism=Drosophila melanogaster, GI24644339, Length=255, Percent_Identity=30.5882352941176, Blast_Score=91, Evalue=9e-19, Organism=Drosophila melanogaster, GI18859837, Length=217, Percent_Identity=32.7188940092166, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI24640492, Length=211, Percent_Identity=28.9099526066351, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI24644337, Length=252, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI17737361, Length=201, Percent_Identity=32.8358208955224, Blast_Score=78, Evalue=4e-15, Organism=Drosophila melanogaster, GI24641232, Length=199, Percent_Identity=30.1507537688442, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI116007236, Length=196, Percent_Identity=28.0612244897959, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI116007238, Length=194, Percent_Identity=27.319587628866, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI221510726, Length=194, Percent_Identity=28.8659793814433, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI21358495, Length=197, Percent_Identity=28.4263959390863, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24648944, Length=203, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI281364494, Length=198, Percent_Identity=28.7878787878788, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24649181, Length=193, Percent_Identity=26.9430051813472, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI28571387, Length=198, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24584752, Length=199, Percent_Identity=27.6381909547739, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.69 [H]
Molecular weight: Translated: 26974; Mature: 26843
Theoretical pI: Translated: 5.87; Mature: 5.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPLPDFSLKGRVALVTGAGRGIGRAIAEVYAQAGAEVVLCARSRTEIAEVAQALVEQGF CCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCC KARAIPCDVTDVADFRALADGLERLDIFVNNAGTNRPRPLVDVTEEDFDVIAGLNLRAAF CCCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCEECCCCCHHHHCCCCHHHHH FALQSVARRMRDLGRGGSIINMSSQMGHIGAADRSVYCATKWGIEGLTKASAIELSPFRI HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEEECCCEEE RVNTICPTFIETPLTRPYFDDPAFREHCLRMIKLGRVGQVGDIVGAALYLASDASALMTG EEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHCC SAVILDGGWTAE CEEEECCCCCCC >Mature Secondary Structure TPLPDFSLKGRVALVTGAGRGIGRAIAEVYAQAGAEVVLCARSRTEIAEVAQALVEQGF CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCC KARAIPCDVTDVADFRALADGLERLDIFVNNAGTNRPRPLVDVTEEDFDVIAGLNLRAAF CCCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCEECCCCCHHHHCCCCHHHHH FALQSVARRMRDLGRGGSIINMSSQMGHIGAADRSVYCATKWGIEGLTKASAIELSPFRI HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEEECCCEEE RVNTICPTFIETPLTRPYFDDPAFREHCLRMIKLGRVGQVGDIVGAALYLASDASALMTG EEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHCC SAVILDGGWTAE CEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7751271 [H]