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The map label for this gene is ycaC [H]

Identifier: 119386215

GI number: 119386215

Start: 648874

End: 649563

Strand: Direct

Name: ycaC [H]

Synonym: Pden_3504

Alternate gene names: 119386215

Gene position: 648874-649563 (Clockwise)

Preceding gene: 119386214

Following gene: 119386216

Centisome position: 37.51

GC content: 64.35

Gene sequence:

>690_bases
ATGTCCAGCAAGCTCGACGTCCTGACCCCGCAGAACAGTCAGGTGATCTTCATCGACCACCAGCCGCAGATGGCTTTCGG
CGTGCAGTCGATCGACCGGCAGGCGCTCAAGAACAATACCGTGGCGCTGGCCAAGGCGGCCAGGGTCTTTGGCGTGCCGG
TGACCATCACCACGGTCGAGACCGACGGCTTTTCGGGGCCGACCTACCCGGAACTGCTCGATGTCTTTCCCGACGCCCCG
CTGCTGGAGCGGACGTCGATGAATTCCTGGGACGACCTCAAGGTGCGCGAGGCGTTGGCTAGGGGCGCCGCCGAGGGGCG
CAGGAAGATCGTCGTCTCGGGGCTCTGGACCGAGGTCTGCAACCTGACCTTTGCGCTCTCCTGCCTGAAGGATACCGACT
ACGAGATCTACATGGTCGCCGATGCCTCGGGCGGCACCTCGGTCGATGCGCACAAATATGCCATGGATCGCATGGTCCAG
GTCGGCGTCGTGCCGGTGACCTGGCAGCAGGTGCTGCTGGAATGGCAGCGCGACTGGGCCCGCAAGGAAACCTACGACGC
GACGCTCGCCATCGTCAGGGAGCATTCCGGCGCCTATGGCATGGGCGTGGATTACGCCTATACCATGGTTCACAAGGCCC
CCTCGCGCAGCATCCACGACGCGCCGCGCCTTGATCCCAAGCCCGCATGA

Upstream 100 bases:

>100_bases
AAAATCCTTCGCGCTTCATGCCGATGACAAGGCGAAGGAGCATGATGCCGCCTGAGCGCATCCTGCATCCCCATCAATCC
CATTCTTCAGGAGGAACTCC

Downstream 100 bases:

>100_bases
GGCATGGGCGCGGGGAGGCGGCGGCCAGCCATGTCCCCGCGCCGCAAGAGCCCCATGCGGAACTGGTCGTCACCGGTTTT
TCCGATGATGCCGTCATGGC

Product: isochorismatase hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MSSKLDVLTPQNSQVIFIDHQPQMAFGVQSIDRQALKNNTVALAKAARVFGVPVTITTVETDGFSGPTYPELLDVFPDAP
LLERTSMNSWDDLKVREALARGAAEGRRKIVVSGLWTEVCNLTFALSCLKDTDYEIYMVADASGGTSVDAHKYAMDRMVQ
VGVVPVTWQQVLLEWQRDWARKETYDATLAIVREHSGAYGMGVDYAYTMVHKAPSRSIHDAPRLDPKPA

Sequences:

>Translated_229_residues
MSSKLDVLTPQNSQVIFIDHQPQMAFGVQSIDRQALKNNTVALAKAARVFGVPVTITTVETDGFSGPTYPELLDVFPDAP
LLERTSMNSWDDLKVREALARGAAEGRRKIVVSGLWTEVCNLTFALSCLKDTDYEIYMVADASGGTSVDAHKYAMDRMVQ
VGVVPVTWQQVLLEWQRDWARKETYDATLAIVREHSGAYGMGVDYAYTMVHKAPSRSIHDAPRLDPKPA
>Mature_228_residues
SSKLDVLTPQNSQVIFIDHQPQMAFGVQSIDRQALKNNTVALAKAARVFGVPVTITTVETDGFSGPTYPELLDVFPDAPL
LERTSMNSWDDLKVREALARGAAEGRRKIVVSGLWTEVCNLTFALSCLKDTDYEIYMVADASGGTSVDAHKYAMDRMVQV
GVVPVTWQQVLLEWQRDWARKETYDATLAIVREHSGAYGMGVDYAYTMVHKAPSRSIHDAPRLDPKPA

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787124, Length=173, Percent_Identity=34.1040462427746, Blast_Score=105, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 25377; Mature: 25246

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSKLDVLTPQNSQVIFIDHQPQMAFGVQSIDRQALKNNTVALAKAARVFGVPVTITTVE
CCCCCCEECCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEHHHHHCCCCEEEEEEE
TDGFSGPTYPELLDVFPDAPLLERTSMNSWDDLKVREALARGAAEGRRKIVVSGLWTEVC
CCCCCCCCHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
NLTFALSCLKDTDYEIYMVADASGGTSVDAHKYAMDRMVQVGVVPVTWQQVLLEWQRDWA
HHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
RKETYDATLAIVREHSGAYGMGVDYAYTMVHKAPSRSIHDAPRLDPKPA
HHHHHHHEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SSKLDVLTPQNSQVIFIDHQPQMAFGVQSIDRQALKNNTVALAKAARVFGVPVTITTVE
CCCCCEECCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEHHHHHCCCCEEEEEEE
TDGFSGPTYPELLDVFPDAPLLERTSMNSWDDLKVREALARGAAEGRRKIVVSGLWTEVC
CCCCCCCCHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
NLTFALSCLKDTDYEIYMVADASGGTSVDAHKYAMDRMVQVGVVPVTWQQVLLEWQRDWA
HHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
RKETYDATLAIVREHSGAYGMGVDYAYTMVHKAPSRSIHDAPRLDPKPA
HHHHHHHEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062312; 8905232; 9278503; 9782055 [H]