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The map label for this gene is potC [H]

Identifier: 119386174

GI number: 119386174

Start: 606235

End: 607188

Strand: Direct

Name: potC [H]

Synonym: Pden_3462

Alternate gene names: 119386174

Gene position: 606235-607188 (Clockwise)

Preceding gene: 119386173

Following gene: 119386175

Centisome position: 35.04

GC content: 65.09

Gene sequence:

>954_bases
ATGGCGCTTCCGACCTATGCCTCGCCCTTGGAGAAGACCTGGCACTACGCCTATCTGGCGATCTGCGCGGCGATCTTCTT
CTTCCTGATCGCGCCGATCGTGGTGGTGATCCCGCTGAGCTTCAACGCCGAGCCCTATTTCACCTTCACCGACCGGATGC
TGTCCTTCGACCCGGACGGCTATTCGCTGCGCTGGTACGACAGCCTGCTGACCTTCGGCATGGCGCGGCCGGACGCGCCG
CGCGACCTGAGCTGGTGGGCGGATGCCTGGCGGAACGCGAAATGGGTGAATGCGGCGAAAAGCTCGATCATCATCGGCTT
TTTCTCGACCATCCTGGCCACGGTGCTGGGCACGCTGGCGGCGCTGGGGCTGTCGCGGCCCGAGATGCCGTATCGCCGGG
CGATCATGGCGGTGCTGATCTCGCCGATGATCGTGCCGATCATCATCACCGCGACGGGGATGTTCTTCTTCTACTCGAAC
CCCTGCGAGCCCCTGACCTGGATCGGCCTGGACCCGCAATGCGGCCGGCTGGCGGGCACCTATCTGGGGGTGATCCTGGC
CCATGCCACGCTGGGCATTCCCTTCGTGATCATCACGGTGACGGCGACGCTGATCGGCTTCGACCAGTCGCTGAACCGGG
CGGCGGCGAGCCTGGGGGCGAACCCGCGCACGACCTTCTTCCGCATCACCATGCCCCTGATCCTGCCCGGGGTGATCTCG
GGGGCGCTGTTCGCCTTCGTGACCTCCTTCGACGAGGTGGTGGCGGTGCTGTTCATCGCCGGGCCGGACCAGCAGACCAT
CCCGCGCCAGATGTGGAACGGCATCCGCGAGCAGATCTCGCCCGCCATCCTCGCCGTCGCCACGCTGCTGGTCATCTTCT
CCATCGCGCTCCTCACAACCGTCGAGATGCTCAGAAGAAGATCCGAAAAACTCAGAGGGCTGACCCCAGGGTGA

Upstream 100 bases:

>100_bases
CGGCCGCGCTGGCGGCGCTGCTGCTGGGCGGGGTGCTGATCCTCTACTGGGTCTACGACCGTCTCGTCGGCATCGACAAC
CTGAAACTGGGGTAACCGCC

Downstream 100 bases:

>100_bases
GGCAGGGGCGCGAAACGGCTTCAACAGACAGCTTGAGAGGGAAAATCATGCCGCATGTCGTTGTCATCGGCGCGGGACAG
GCCGGGGCCGCCCTGGCGGC

Product: binding-protein-dependent transport systems inner membrane component

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 316

Protein sequence:

>317_residues
MALPTYASPLEKTWHYAYLAICAAIFFFLIAPIVVVIPLSFNAEPYFTFTDRMLSFDPDGYSLRWYDSLLTFGMARPDAP
RDLSWWADAWRNAKWVNAAKSSIIIGFFSTILATVLGTLAALGLSRPEMPYRRAIMAVLISPMIVPIIITATGMFFFYSN
PCEPLTWIGLDPQCGRLAGTYLGVILAHATLGIPFVIITVTATLIGFDQSLNRAAASLGANPRTTFFRITMPLILPGVIS
GALFAFVTSFDEVVAVLFIAGPDQQTIPRQMWNGIREQISPAILAVATLLVIFSIALLTTVEMLRRRSEKLRGLTPG

Sequences:

>Translated_317_residues
MALPTYASPLEKTWHYAYLAICAAIFFFLIAPIVVVIPLSFNAEPYFTFTDRMLSFDPDGYSLRWYDSLLTFGMARPDAP
RDLSWWADAWRNAKWVNAAKSSIIIGFFSTILATVLGTLAALGLSRPEMPYRRAIMAVLISPMIVPIIITATGMFFFYSN
PCEPLTWIGLDPQCGRLAGTYLGVILAHATLGIPFVIITVTATLIGFDQSLNRAAASLGANPRTTFFRITMPLILPGVIS
GALFAFVTSFDEVVAVLFIAGPDQQTIPRQMWNGIREQISPAILAVATLLVIFSIALLTTVEMLRRRSEKLRGLTPG
>Mature_316_residues
ALPTYASPLEKTWHYAYLAICAAIFFFLIAPIVVVIPLSFNAEPYFTFTDRMLSFDPDGYSLRWYDSLLTFGMARPDAPR
DLSWWADAWRNAKWVNAAKSSIIIGFFSTILATVLGTLAALGLSRPEMPYRRAIMAVLISPMIVPIIITATGMFFFYSNP
CEPLTWIGLDPQCGRLAGTYLGVILAHATLGIPFVIITVTATLIGFDQSLNRAAASLGANPRTTFFRITMPLILPGVISG
ALFAFVTSFDEVVAVLFIAGPDQQTIPRQMWNGIREQISPAILAVATLLVIFSIALLTTVEMLRRRSEKLRGLTPG

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=227, Percent_Identity=27.7533039647577, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787081, Length=313, Percent_Identity=27.4760383386581, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787714, Length=277, Percent_Identity=27.7978339350181, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1788764, Length=229, Percent_Identity=27.5109170305677, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1787080, Length=150, Percent_Identity=29.3333333333333, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786980, Length=141, Percent_Identity=35.4609929078014, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34910; Mature: 34778

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALPTYASPLEKTWHYAYLAICAAIFFFLIAPIVVVIPLSFNAEPYFTFTDRMLSFDPDG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHEECCCC
YSLRWYDSLLTFGMARPDAPRDLSWWADAWRNAKWVNAAKSSIIIGFFSTILATVLGTLA
CEEHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALGLSRPEMPYRRAIMAVLISPMIVPIIITATGMFFFYSNPCEPLTWIGLDPQCGRLAGT
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEECCCCCHHHHHHH
YLGVILAHATLGIPFVIITVTATLIGFDQSLNRAAASLGANPRTTFFRITMPLILPGVIS
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHH
GALFAFVTSFDEVVAVLFIAGPDQQTIPRQMWNGIREQISPAILAVATLLVIFSIALLTT
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEMLRRRSEKLRGLTPG
HHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ALPTYASPLEKTWHYAYLAICAAIFFFLIAPIVVVIPLSFNAEPYFTFTDRMLSFDPDG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHEECCCC
YSLRWYDSLLTFGMARPDAPRDLSWWADAWRNAKWVNAAKSSIIIGFFSTILATVLGTLA
CEEHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALGLSRPEMPYRRAIMAVLISPMIVPIIITATGMFFFYSNPCEPLTWIGLDPQCGRLAGT
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEECCCCCHHHHHHH
YLGVILAHATLGIPFVIITVTATLIGFDQSLNRAAASLGANPRTTFFRITMPLILPGVIS
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHH
GALFAFVTSFDEVVAVLFIAGPDQQTIPRQMWNGIREQISPAILAVATLLVIFSIALLTT
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEMLRRRSEKLRGLTPG
HHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]