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The map label for this gene is rplY

Identifier: 119357476

GI number: 119357476

Start: 1903291

End: 1903887

Strand: Direct

Name: rplY

Synonym: Cpha266_1675

Alternate gene names: 119357476

Gene position: 1903291-1903887 (Clockwise)

Preceding gene: 119357475

Following gene: 119357477

Centisome position: 60.73

GC content: 49.41

Gene sequence:

>597_bases
ATGGAAATCATCGCATTGGGGGTTGAACCTCGCATTATCAGAAAAAAAGAAGCGGCAAAACTGCGTAAAACCGGAATAGT
TCCTGCCGTGATCTACCATAAAGGTGAAGAAACCATCTCGGTAAGCGTCAATGAAATAGCACTGAAAAAACTTGTTCATT
CAGCAGAATCGCACATCATCGATCTCAAATTTCCCGATGGCAAAACCGTGCGATCGTTCATCAAGGATGTACAGTTCGAC
CCGGTAACCGACAGAATCATTCATACGGACTTTCAGCTCTTCTCCGCTGACGAACTCGTTGAGATGGATGTACCTGTTGG
CACAACGGGAGATGCTGTCGGCGTTGAAAAAGGCGGCAGAATCCAGATCATCAAGCATGCGCTCACCCTCAAGGGGATGC
CTGCCGACATGCCCGATCATTTTCTCATTGACTGCACCAACCTTGAGATCGGCCACTCTATCCATGTAAGGGAAATTCCG
ATGGATGCCCGTCCTGGACTGACCATCATGGACGATCCCGACACTCCGGTTGTCACCATTGTTGCGCCGAAAAAGGAAGC
CGAGCCTGCTGCTGAAACGGCTGTATCTGCAAGCTGA

Upstream 100 bases:

>100_bases
GACGATTCGGTCAGTTGCCTCTTCGACAGTAAAGACATAAGCACCAAGATCAAAAACTATCATTAACATCACAAGAGAAA
AAAAGAGATAGAGGAAAAGC

Downstream 100 bases:

>100_bases
AACCGCCGTACCGGCATGCTGCAAACAACCATTTTCAAAAAAACAGCTTTTTCTCCATGAGAAAGCTGTTTTTTTTTATC
CGAATTGTTTGATTTTGTGC

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MEIIALGVEPRIIRKKEAAKLRKTGIVPAVIYHKGEETISVSVNEIALKKLVHSAESHIIDLKFPDGKTVRSFIKDVQFD
PVTDRIIHTDFQLFSADELVEMDVPVGTTGDAVGVEKGGRIQIIKHALTLKGMPADMPDHFLIDCTNLEIGHSIHVREIP
MDARPGLTIMDDPDTPVVTIVAPKKEAEPAAETAVSAS

Sequences:

>Translated_198_residues
MEIIALGVEPRIIRKKEAAKLRKTGIVPAVIYHKGEETISVSVNEIALKKLVHSAESHIIDLKFPDGKTVRSFIKDVQFD
PVTDRIIHTDFQLFSADELVEMDVPVGTTGDAVGVEKGGRIQIIKHALTLKGMPADMPDHFLIDCTNLEIGHSIHVREIP
MDARPGLTIMDDPDTPVVTIVAPKKEAEPAAETAVSAS
>Mature_198_residues
MEIIALGVEPRIIRKKEAAKLRKTGIVPAVIYHKGEETISVSVNEIALKKLVHSAESHIIDLKFPDGKTVRSFIKDVQFD
PVTDRIIHTDFQLFSADELVEMDVPVGTTGDAVGVEKGGRIQIIKHALTLKGMPADMPDHFLIDCTNLEIGHSIHVREIP
MDARPGLTIMDDPDTPVVTIVAPKKEAEPAAETAVSAS

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL25_CHLPD (A1BH19)

Other databases:

- EMBL:   CP000492
- RefSeq:   YP_912120.1
- ProteinModelPortal:   A1BH19
- SMR:   A1BH19
- STRING:   A1BH19
- GeneID:   4571055
- GenomeReviews:   CP000492_GR
- KEGG:   cph:Cpha266_1675
- NMPDR:   fig|290317.7.peg.1756
- eggNOG:   COG1825
- HOGENOM:   HBG731986
- OMA:   TDNTVLI
- ProtClustDB:   PRK05618
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01334
- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- Gene3D:   G3DSA:2.40.240.10
- Gene3D:   G3DSA:2.170.120.20
- ProDom:   PD012503
- TIGRFAMs:   TIGR00731

Pfam domain/function: PF01386 Ribosomal_L25p; SSF50715 Ribosomal_L25rel

EC number: NA

Molecular weight: Translated: 21599; Mature: 21599

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIIALGVEPRIIRKKEAAKLRKTGIVPAVIYHKGEETISVSVNEIALKKLVHSAESHII
CEEEEECCCCCEECHHHHHHHHHCCCCEEEEEECCCCEEEEEHHHHHHHHHHHHHHHCEE
DLKFPDGKTVRSFIKDVQFDPVTDRIIHTDFQLFSADELVEMDVPVGTTGDAVGVEKGGR
EEECCCCHHHHHHHHHCCCCCCCCCEEECCCEEECCCCEEEECCCCCCCCCCCCCCCCCE
IQIIKHALTLKGMPADMPDHFLIDCTNLEIGHSIHVREIPMDARPGLTIMDDPDTPVVTI
EEEEEEEEHCCCCCCCCCCCEEEEECCEEECCEEEEEECCCCCCCCEEEEECCCCCEEEE
VAPKKEAEPAAETAVSAS
EECCCCCCCHHHHHCCCC
>Mature Secondary Structure
MEIIALGVEPRIIRKKEAAKLRKTGIVPAVIYHKGEETISVSVNEIALKKLVHSAESHII
CEEEEECCCCCEECHHHHHHHHHCCCCEEEEEECCCCEEEEEHHHHHHHHHHHHHHHCEE
DLKFPDGKTVRSFIKDVQFDPVTDRIIHTDFQLFSADELVEMDVPVGTTGDAVGVEKGGR
EEECCCCHHHHHHHHHCCCCCCCCCEEECCCEEECCCCEEEECCCCCCCCCCCCCCCCCE
IQIIKHALTLKGMPADMPDHFLIDCTNLEIGHSIHVREIPMDARPGLTIMDDPDTPVVTI
EEEEEEEEHCCCCCCCCCCCEEEEECCEEECCEEEEEECCCCCCCCEEEEECCCCCEEEE
VAPKKEAEPAAETAVSAS
EECCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA