Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
---|---|
Accession | NC_008639 |
Length | 3,133,902 |
Click here to switch to the map view.
The map label for this gene is gltB [C]
Identifier: 119357372
GI number: 119357372
Start: 1786143
End: 1787732
Strand: Direct
Name: gltB [C]
Synonym: Cpha266_1570
Alternate gene names: 119357372
Gene position: 1786143-1787732 (Clockwise)
Preceding gene: 119357371
Following gene: 119357373
Centisome position: 56.99
GC content: 51.57
Gene sequence:
>1590_bases ATGGCAAAATGGCAATGTGGGCTATGTTCTTATATTTACGATGAAAACAAAGAATCCGTCGCATGGGATGCCCTTGCGAA TGACTGGATATGTCCTGTCTGCGGCTCTCCGAAATCCTCGTTTGTCCCGCTGAAAGAACAACAACCCGAAACCCCGGAGG CTGAAAGCAAATCTGTTTCAACAAACATTTATGAATGCGCTCTCTGCTCGTATGCCTATGATGAATCAAAAGAAGGCGTC CTGTGGCAGGATCTTCCCGAAGAGTGGAAATGTCCGGTCTGCGGGTCAGGTAAAGAGAGCTTCAGGCTTGCGGCATCCCT CCGAGCAGCAACCGCCGGGATTGGCGCCGAAACAGGCTCTGGAGAAGAGTACCTTGCGGAATGGCGACGACCGGCTGACG ATTTCGAGACCAGCATGGCCGACATCCACCACCTTGCCATGACGGGAAAATCGATTATCGAACCTATGCGAACACGCATT CCCTCATTCTCCTGGGATGAAATCCTCATTAAAGGTGCGCAACTTGCAAAAATGCCGCTCAACAAAACACAACCGGTTAC CACACAAACCCTGATAGGTCCCGCAGCGGCTTTGCCGCTCGTGCTCGAAACACCGGTTTTTGTTTCCCATATGTCCTTCG GCGCCTTGTCGAGAGAAGCAAAGCTCGCTCTTGCAAAAGGCAGCGCACAGGCAAAAACAGCCATGTGCTCGGGTGAAGGA GGTATTCTGCCCGAATCACTTAAGGCCTCATACCGTTACATATTCGAATACGTTCCCAATAAATACAGTGTAACCGACGA GAATCTGAGGCTGGTCGATGCTGTGGAAATCAAAATAGGACAGTCCGCAAAACCGGGCATGGGCGGTCATCTTCCGGGAA ACAAGGTAACCCGTGAAATCGCTGCTATCCGGGGATTTCGTGAAGGACAGGATATTATCAGCCCGTCGCACTTCCCTGAT ATCCGCTCAAAAGAGGATCTGAAAGCCACGGTCAGTCATTTGCGTCTGAAAACCGGAGGAAAACCGATTGGCATCAAGCT TGCGGCAGGCCATATCGAAGAAGATATCGATATAGCTCTTTTTGCGGGAGTTGATTTCATCACTATCGACGGTCGGGCAG GTGGAACTGGCGCTTCTCCCAAAGTTGTTAAAAACGCTGCTTCGGTGCCAACCATTTTCGCTCTGGCAAGAGCGAGAAAA ATACTTGATTTGAGAGGAGCCGATACCGTTTCACTGATTGTTACCGGTGGCCTGCGCGTCTCTTCAGACTTCGCCAAGGC GCTGGCAATGGGAGCCGACGCCATAGCTGTCGGGACTGCGGCCATGATGGCTGTCGGCTGTCAGCAGTACCGTATCTGCA ATACCGACAAATGTCCGGTCGGCATCGCCACGCAGGATCCTGCTCTTCGCGCTCGTATGGATGTCGATAAATCCGCCATG CGCGTTGCGAACTTTTTCAAAGCCGTCACCGAAGAGCTCCGCGACTTTGCTCGCCTGACCGGCAATGATAATGTTCACCA TCTCTCGCAGGATGATTTATGTACCACCAATTCCGAAATTTCCAATCATACCTCTATCGAGCACGTCTGA
Upstream 100 bases:
>100_bases CCAAAAAAAGCGGAAGCATCTTTTCATGATCTCAATCAGGAATAATTCCTTTTATATTGATTAAATCATATTTCGTAATC ACCTCATCATACCGCGTCTT
Downstream 100 bases:
>100_bases TCAACAGCAGTCTCCCGACAAGAACAAGGTGAGGCATAAAAAAACAAGAGGAAACACGCCATGTCAACAACAGAAAATCT TCAGAACGCTTTCGCAGGAG
Product: glutamate synthase (NADPH) GltB2 subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 529; Mature: 528
Protein sequence:
>529_residues MAKWQCGLCSYIYDENKESVAWDALANDWICPVCGSPKSSFVPLKEQQPETPEAESKSVSTNIYECALCSYAYDESKEGV LWQDLPEEWKCPVCGSGKESFRLAASLRAATAGIGAETGSGEEYLAEWRRPADDFETSMADIHHLAMTGKSIIEPMRTRI PSFSWDEILIKGAQLAKMPLNKTQPVTTQTLIGPAAALPLVLETPVFVSHMSFGALSREAKLALAKGSAQAKTAMCSGEG GILPESLKASYRYIFEYVPNKYSVTDENLRLVDAVEIKIGQSAKPGMGGHLPGNKVTREIAAIRGFREGQDIISPSHFPD IRSKEDLKATVSHLRLKTGGKPIGIKLAAGHIEEDIDIALFAGVDFITIDGRAGGTGASPKVVKNAASVPTIFALARARK ILDLRGADTVSLIVTGGLRVSSDFAKALAMGADAIAVGTAAMMAVGCQQYRICNTDKCPVGIATQDPALRARMDVDKSAM RVANFFKAVTEELRDFARLTGNDNVHHLSQDDLCTTNSEISNHTSIEHV
Sequences:
>Translated_529_residues MAKWQCGLCSYIYDENKESVAWDALANDWICPVCGSPKSSFVPLKEQQPETPEAESKSVSTNIYECALCSYAYDESKEGV LWQDLPEEWKCPVCGSGKESFRLAASLRAATAGIGAETGSGEEYLAEWRRPADDFETSMADIHHLAMTGKSIIEPMRTRI PSFSWDEILIKGAQLAKMPLNKTQPVTTQTLIGPAAALPLVLETPVFVSHMSFGALSREAKLALAKGSAQAKTAMCSGEG GILPESLKASYRYIFEYVPNKYSVTDENLRLVDAVEIKIGQSAKPGMGGHLPGNKVTREIAAIRGFREGQDIISPSHFPD IRSKEDLKATVSHLRLKTGGKPIGIKLAAGHIEEDIDIALFAGVDFITIDGRAGGTGASPKVVKNAASVPTIFALARARK ILDLRGADTVSLIVTGGLRVSSDFAKALAMGADAIAVGTAAMMAVGCQQYRICNTDKCPVGIATQDPALRARMDVDKSAM RVANFFKAVTEELRDFARLTGNDNVHHLSQDDLCTTNSEISNHTSIEHV >Mature_528_residues AKWQCGLCSYIYDENKESVAWDALANDWICPVCGSPKSSFVPLKEQQPETPEAESKSVSTNIYECALCSYAYDESKEGVL WQDLPEEWKCPVCGSGKESFRLAASLRAATAGIGAETGSGEEYLAEWRRPADDFETSMADIHHLAMTGKSIIEPMRTRIP SFSWDEILIKGAQLAKMPLNKTQPVTTQTLIGPAAALPLVLETPVFVSHMSFGALSREAKLALAKGSAQAKTAMCSGEGG ILPESLKASYRYIFEYVPNKYSVTDENLRLVDAVEIKIGQSAKPGMGGHLPGNKVTREIAAIRGFREGQDIISPSHFPDI RSKEDLKATVSHLRLKTGGKPIGIKLAAGHIEEDIDIALFAGVDFITIDGRAGGTGASPKVVKNAASVPTIFALARARKI LDLRGADTVSLIVTGGLRVSSDFAKALAMGADAIAVGTAAMMAVGCQQYRICNTDKCPVGIATQDPALRARMDVDKSAMR VANFFKAVTEELRDFARLTGNDNVHHLSQDDLCTTNSEISNHTSIEHV
Specific function: NITROGEN METABOLISM, GLUTAMATE BIOSYNTHESIS. THE CATALYZED REACTION BRINGS TOGETHER THE NITROGEN AND CARBON METABOLISM. [C]
COG id: COG0069
COG function: function code E; Glutamate synthase domain 2
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]
Homologues:
Organism=Escherichia coli, GI308199519, Length=292, Percent_Identity=36.3013698630137, Blast_Score=136, Evalue=3e-33, Organism=Caenorhabditis elegans, GI17570289, Length=349, Percent_Identity=32.378223495702, Blast_Score=148, Evalue=6e-36, Organism=Saccharomyces cerevisiae, GI6320030, Length=299, Percent_Identity=33.4448160535117, Blast_Score=134, Evalue=4e-32, Organism=Drosophila melanogaster, GI28574881, Length=292, Percent_Identity=33.9041095890411, Blast_Score=136, Evalue=4e-32, Organism=Drosophila melanogaster, GI24665539, Length=292, Percent_Identity=33.9041095890411, Blast_Score=136, Evalue=4e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR013785 - InterPro: IPR002932 [H]
Pfam domain/function: PF01645 Glu_synthase [H]
EC number: =1.4.1.13 [H]
Molecular weight: Translated: 57015; Mature: 56883
Theoretical pI: Translated: 6.15; Mature: 6.15
Prosite motif: PS00202 RUBREDOXIN ; PS50903 RUBREDOXIN_LIKE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKWQCGLCSYIYDENKESVAWDALANDWICPVCGSPKSSFVPLKEQQPETPEAESKSVS CCCCCCCHHHHHHCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TNIYECALCSYAYDESKEGVLWQDLPEEWKCPVCGSGKESFRLAASLRAATAGIGAETGS CCHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC GEEYLAEWRRPADDFETSMADIHHLAMTGKSIIEPMRTRIPSFSWDEILIKGAQLAKMPL CHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHCCCHHHCCCC NKTQPVTTQTLIGPAAALPLVLETPVFVSHMSFGALSREAKLALAKGSAQAKTAMCSGEG CCCCCCCHHHHHCHHHHCCHHEECCHHHHHHHHHHHCCHHHEEEECCCCHHHHEEECCCC GILPESLKASYRYIFEYVPNKYSVTDENLRLVDAVEIKIGQSAKPGMGGHLPGNKVTREI CCCHHHHHHHHHHHHHHCCCCEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHH AAIRGFREGQDIISPSHFPDIRSKEDLKATVSHLRLKTGGKPIGIKLAAGHIEEDIDIAL HHHHCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEE FAGVDFITIDGRAGGTGASPKVVKNAASVPTIFALARARKILDLRGADTVSLIVTGGLRV EECCEEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCEE SSDFAKALAMGADAIAVGTAAMMAVGCQQYRICNTDKCPVGIATQDPALRARMDVDKSAM CHHHHHHHHCCCCHHHHHHHHHHHHCHHHEEECCCCCCCCCCCCCCCHHHHHCCCCHHHH RVANFFKAVTEELRDFARLTGNDNVHHLSQDDLCTTNSEISNHTSIEHV HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure AKWQCGLCSYIYDENKESVAWDALANDWICPVCGSPKSSFVPLKEQQPETPEAESKSVS CCCCCCHHHHHHCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TNIYECALCSYAYDESKEGVLWQDLPEEWKCPVCGSGKESFRLAASLRAATAGIGAETGS CCHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC GEEYLAEWRRPADDFETSMADIHHLAMTGKSIIEPMRTRIPSFSWDEILIKGAQLAKMPL CHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHCCCHHHCCCC NKTQPVTTQTLIGPAAALPLVLETPVFVSHMSFGALSREAKLALAKGSAQAKTAMCSGEG CCCCCCCHHHHHCHHHHCCHHEECCHHHHHHHHHHHCCHHHEEEECCCCHHHHEEECCCC GILPESLKASYRYIFEYVPNKYSVTDENLRLVDAVEIKIGQSAKPGMGGHLPGNKVTREI CCCHHHHHHHHHHHHHHCCCCEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHH AAIRGFREGQDIISPSHFPDIRSKEDLKATVSHLRLKTGGKPIGIKLAAGHIEEDIDIAL HHHHCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEE FAGVDFITIDGRAGGTGASPKVVKNAASVPTIFALARARKILDLRGADTVSLIVTGGLRV EECCEEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCEE SSDFAKALAMGADAIAVGTAAMMAVGCQQYRICNTDKCPVGIATQDPALRARMDVDKSAM CHHHHHHHHCCCCHHHHHHHHHHHHCHHHEEECCCCCCCCCCCCCCCHHHHHCCCCHHHH RVANFFKAVTEELRDFARLTGNDNVHHLSQDDLCTTNSEISNHTSIEHV HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]