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The map label for this gene is 119357288

Identifier: 119357288

GI number: 119357288

Start: 1680674

End: 1682248

Strand: Direct

Name: 119357288

Synonym: Cpha266_1482

Alternate gene names: NA

Gene position: 1680674-1682248 (Clockwise)

Preceding gene: 119357286

Following gene: 119357289

Centisome position: 53.63

GC content: 49.9

Gene sequence:

>1575_bases
ATGGCAAACAAGGCCTTGACTATGTTACAAGTTCGACGTATTCTCAAACTCTTGATGGAGGAGTGTTCCCAACGGGAAAT
CCATCGCAGTACAGGTATTCACCGCGTCACCATCAAAAGCTATCTGCACCGGTTTACGAGCAGCGGAAAACCGTTTTCAG
AGCTGTATGCGCTCTCTGATTACGATCTTTCTGTTCTGGTTCACCCACCCCGTTCCACCAAAACCTCTGATGAACGGTAT
GCAGATCTCCAGCCCCAACTGCAACGTTTTTCTGATGAGCTGAACAAGACGAACTCTCATGTTACCAAGCAGGTGTTATG
GGAAGAGTATCTTCAGGATCGACCTACTGGGTATCAATATTCCCAGTTTTGCTATCACGTGGATCAGTACATAAAACAGC
ATGCCGTCACGATGCCGCAGCAGCATGAGCCGGGCTACCGACTGCAGATCGACTTTGCTGGTGATCCGCTCTGGATTATC
GACCCGCTTACCAGAGAACGCATCAAGTGCCCGGTTCTGGTCTGCACGTTGCCTTGCAGCAGCTTTTTTTACGTTGAACC
GCTCTCATCTTGCAGGCAGGAGCACCTGATTCCTGCACTCAATCGGGCGCTTGCCTATTTTGGCGGTGTTCCCAAAAACA
TTCTGAGCGACAACATGAAACAGGTCGTGACAACAGCATCACGCTATGAGCCTGTTTTCAATGATCTTATGGAACAATGG
GCCTTGCACTATCAGACCAACATGCAGGCAACCAGAGCCGTCAGGCCCAAGGATAAGCCATCTGTTGAAGGCTCGGTGCA
CCATGCTTATCAGCAGATTTACGCAAGGTTGCGCAATGAGGAGTTCACCAGTCTGAGTGCGTTGACGTATCGGGTTCGGC
ATCTGCTTGATACGGCCAATGATCGGCTGATGACCGATTATGGCAAGAGTCGCAGACAGCGGTTTATAGAACTTGAGCAA
GAGTTTTTACAGCCACTGCCGCTGACTGATTTTGTGTACAAGCGTGAAACAACTGCCAAAGTCAAGAAAAATTATCATGT
CATTCTGGGCGAAGACCGCTGCCAGTACAGTGTTCCGCATGAGCATATCGGCAAAATCGTCAAGCTGATCTATGATGAAT
CGGTGGTTGAGGTATTTCTTGATTTCCAGCGTATCGCCTTGCATCAGCGCATCGTCGGACGCCGGGGTATCTACAGAACT
GTCGAGGAACATATGCCGGAATCACATCGCCGGTACCATCAGCAACAAGGGTGGACTGAGGAGGACTTTACCAGCAAAGC
TGCCGCTGTCGGGCCCTGTACCGAGGAAGCTGTTTTGCGGCTTCTGAGTTCAAAAGCTTTTGCACAACAGAGCTTTGATG
CCTGCCTGGGCATTCTCCGGCTCCAGAAAAAGTATGGAACAACAAGACTCGAAGCGGCTTGCAGTGTAGCCCTGCAAGTC
CCACGCCTCAACTATCGACTCGTCAACAACATTCTGGAAAACAACAGGGACAAGGTCTCTGTTGCAGCAGGAGAACAGCG
TGCATCACTGCTTCCGTTGCATGACAATATTCGCGGTAAAGAAGTCTACAATTAA

Upstream 100 bases:

>100_bases
AATATGTGCCACCCGTACCGGAGTAAAGTGCGCCACCCCAGCAGGCCGGATTTGTAACATCATAAACCGTACCTTCGATC
TAACAAACCGGAGGTACACC

Downstream 100 bases:

>100_bases
CCTCATTCAACACCATGACCATGAATACCCAGCTTACCCTTGACCAGCTTCGCTCTATGAACCTTTATGGTATGGCAAAT
GCCTATGAAGCCGCCATGAC

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 524; Mature: 523

Protein sequence:

>524_residues
MANKALTMLQVRRILKLLMEECSQREIHRSTGIHRVTIKSYLHRFTSSGKPFSELYALSDYDLSVLVHPPRSTKTSDERY
ADLQPQLQRFSDELNKTNSHVTKQVLWEEYLQDRPTGYQYSQFCYHVDQYIKQHAVTMPQQHEPGYRLQIDFAGDPLWII
DPLTRERIKCPVLVCTLPCSSFFYVEPLSSCRQEHLIPALNRALAYFGGVPKNILSDNMKQVVTTASRYEPVFNDLMEQW
ALHYQTNMQATRAVRPKDKPSVEGSVHHAYQQIYARLRNEEFTSLSALTYRVRHLLDTANDRLMTDYGKSRRQRFIELEQ
EFLQPLPLTDFVYKRETTAKVKKNYHVILGEDRCQYSVPHEHIGKIVKLIYDESVVEVFLDFQRIALHQRIVGRRGIYRT
VEEHMPESHRRYHQQQGWTEEDFTSKAAAVGPCTEEAVLRLLSSKAFAQQSFDACLGILRLQKKYGTTRLEAACSVALQV
PRLNYRLVNNILENNRDKVSVAAGEQRASLLPLHDNIRGKEVYN

Sequences:

>Translated_524_residues
MANKALTMLQVRRILKLLMEECSQREIHRSTGIHRVTIKSYLHRFTSSGKPFSELYALSDYDLSVLVHPPRSTKTSDERY
ADLQPQLQRFSDELNKTNSHVTKQVLWEEYLQDRPTGYQYSQFCYHVDQYIKQHAVTMPQQHEPGYRLQIDFAGDPLWII
DPLTRERIKCPVLVCTLPCSSFFYVEPLSSCRQEHLIPALNRALAYFGGVPKNILSDNMKQVVTTASRYEPVFNDLMEQW
ALHYQTNMQATRAVRPKDKPSVEGSVHHAYQQIYARLRNEEFTSLSALTYRVRHLLDTANDRLMTDYGKSRRQRFIELEQ
EFLQPLPLTDFVYKRETTAKVKKNYHVILGEDRCQYSVPHEHIGKIVKLIYDESVVEVFLDFQRIALHQRIVGRRGIYRT
VEEHMPESHRRYHQQQGWTEEDFTSKAAAVGPCTEEAVLRLLSSKAFAQQSFDACLGILRLQKKYGTTRLEAACSVALQV
PRLNYRLVNNILENNRDKVSVAAGEQRASLLPLHDNIRGKEVYN
>Mature_523_residues
ANKALTMLQVRRILKLLMEECSQREIHRSTGIHRVTIKSYLHRFTSSGKPFSELYALSDYDLSVLVHPPRSTKTSDERYA
DLQPQLQRFSDELNKTNSHVTKQVLWEEYLQDRPTGYQYSQFCYHVDQYIKQHAVTMPQQHEPGYRLQIDFAGDPLWIID
PLTRERIKCPVLVCTLPCSSFFYVEPLSSCRQEHLIPALNRALAYFGGVPKNILSDNMKQVVTTASRYEPVFNDLMEQWA
LHYQTNMQATRAVRPKDKPSVEGSVHHAYQQIYARLRNEEFTSLSALTYRVRHLLDTANDRLMTDYGKSRRQRFIELEQE
FLQPLPLTDFVYKRETTAKVKKNYHVILGEDRCQYSVPHEHIGKIVKLIYDESVVEVFLDFQRIALHQRIVGRRGIYRTV
EEHMPESHRRYHQQQGWTEEDFTSKAAAVGPCTEEAVLRLLSSKAFAQQSFDACLGILRLQKKYGTTRLEAACSVALQVP
RLNYRLVNNILENNRDKVSVAAGEQRASLLPLHDNIRGKEVYN

Specific function: Unknown

COG id: COG4584

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR017895
- InterPro:   IPR001584
- InterPro:   IPR013249
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 60984; Mature: 60853

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANKALTMLQVRRILKLLMEECSQREIHRSTGIHRVTIKSYLHRFTSSGKPFSELYALSD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCCCCHHHHHHCCC
YDLSVLVHPPRSTKTSDERYADLQPQLQRFSDELNKTNSHVTKQVLWEEYLQDRPTGYQY
CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
SQFCYHVDQYIKQHAVTMPQQHEPGYRLQIDFAGDPLWIIDPLTRERIKCPVLVCTLPCS
HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEECCCCHHHCCCCEEEEECCCC
SFFYVEPLSSCRQEHLIPALNRALAYFGGVPKNILSDNMKQVVTTASRYEPVFNDLMEQW
CCEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
ALHYQTNMQATRAVRPKDKPSVEGSVHHAYQQIYARLRNEEFTSLSALTYRVRHLLDTAN
HHHHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
DRLMTDYGKSRRQRFIELEQEFLQPLPLTDFVYKRETTAKVKKNYHVILGEDRCQYSVPH
CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCH
EHIGKIVKLIYDESVVEVFLDFQRIALHQRIVGRRGIYRTVEEHMPESHRRYHQQQGWTE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHCCCCH
EDFTSKAAAVGPCTEEAVLRLLSSKAFAQQSFDACLGILRLQKKYGTTRLEAACSVALQV
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
PRLNYRLVNNILENNRDKVSVAAGEQRASLLPLHDNIRGKEVYN
CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ANKALTMLQVRRILKLLMEECSQREIHRSTGIHRVTIKSYLHRFTSSGKPFSELYALSD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCCCCHHHHHHCCC
YDLSVLVHPPRSTKTSDERYADLQPQLQRFSDELNKTNSHVTKQVLWEEYLQDRPTGYQY
CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
SQFCYHVDQYIKQHAVTMPQQHEPGYRLQIDFAGDPLWIIDPLTRERIKCPVLVCTLPCS
HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEECCCCHHHCCCCEEEEECCCC
SFFYVEPLSSCRQEHLIPALNRALAYFGGVPKNILSDNMKQVVTTASRYEPVFNDLMEQW
CCEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
ALHYQTNMQATRAVRPKDKPSVEGSVHHAYQQIYARLRNEEFTSLSALTYRVRHLLDTAN
HHHHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
DRLMTDYGKSRRQRFIELEQEFLQPLPLTDFVYKRETTAKVKKNYHVILGEDRCQYSVPH
CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCH
EHIGKIVKLIYDESVVEVFLDFQRIALHQRIVGRRGIYRTVEEHMPESHRRYHQQQGWTE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHCCCCH
EDFTSKAAAVGPCTEEAVLRLLSSKAFAQQSFDACLGILRLQKKYGTTRLEAACSVALQV
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
PRLNYRLVNNILENNRDKVSVAAGEQRASLLPLHDNIRGKEVYN
CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]