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The map label for this gene is ybbK [C]

Identifier: 119356978

GI number: 119356978

Start: 1308424

End: 1309170

Strand: Direct

Name: ybbK [C]

Synonym: Cpha266_1161

Alternate gene names: 119356978

Gene position: 1308424-1309170 (Clockwise)

Preceding gene: 119356977

Following gene: 119356979

Centisome position: 41.75

GC content: 49.0

Gene sequence:

>747_bases
ATGCTTACGTTTAATGTTCTCACGGTTCTGATTCTGGTCGGCGTTTTCTTCTTTTCGGCAGTTAAAATTCTCAGGGAGTA
CGAACGCGGCGTTATTTTTCGCCTCGGCCGCGCCATAGGCCCGAAAGGACCGGGGCTTATCATTCTTCTTCCCGGTATTG
ACAAAATGGTGAAGGTAGATCTCAGAACGGTAACGCTTGATGTGCCTCCGCAGGATATTATCACTCGTGATAACGTTTCG
GTTAAAGTGAGCGCTGTGGTCTATTTCAGGGTTCTGGATTCCATGAAGGCAATACTCGATGTGGCTGATTTTCATTTCGC
TACGTCACAACTTGCCCAGACAACCCTGAGAAGCGTTTGCGGTCAGGGTGAGCTCGATAACCTGCTTGCCGAAAGAGATG
AAATCAATGAACGAATCCAGAATATCCTTGACAAGGATACCGAACCATGGGGGGTGAAGGTAAGCAAGGTTGAGGTTAAG
GAGATCGATCTTCCAGAAGAGATGCGCCGGGCCATGGCCAAACAGGCTGAAGCTGAAAGGGAGAGACGTTCCAAAATCAT
CAATGCGGAAGGGGAGTTTCAGGCTGCGCAGCGACTGGCCGACGCGGCGGCAATTATCTCCTCCGCCCCTGCGGCTCTCC
AGTTGCGTTATTTGCAGACTTTGAAGGATATTGCCGGACAGAATAATTCAACAACCATTTTTCCGGTACCTATTGATCTG
CTGAGAGCTTTTATGGAAAACAAGTAA

Upstream 100 bases:

>100_bases
ATGCTTCATCTTCGGAATGCATCGTTGAGGAAACCGTTGTTGTCGTTACTGGTATAGAGGGAATGGAATTGAAGGTTAAA
ACAAAACAAAAGGAATAATC

Downstream 100 bases:

>100_bases
CTTGTCTTTTCAAAAGATTTTTTAATAAAACAAGGAGCGACCATGTTCAGAATACAAACCATTCTCTGTCCGGTTGATTT
TTCAGATGCGTCAACGAAAG

Product: SPFH domain-containing protein/band 7 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MLTFNVLTVLILVGVFFFSAVKILREYERGVIFRLGRAIGPKGPGLIILLPGIDKMVKVDLRTVTLDVPPQDIITRDNVS
VKVSAVVYFRVLDSMKAILDVADFHFATSQLAQTTLRSVCGQGELDNLLAERDEINERIQNILDKDTEPWGVKVSKVEVK
EIDLPEEMRRAMAKQAEAERERRSKIINAEGEFQAAQRLADAAAIISSAPAALQLRYLQTLKDIAGQNNSTTIFPVPIDL
LRAFMENK

Sequences:

>Translated_248_residues
MLTFNVLTVLILVGVFFFSAVKILREYERGVIFRLGRAIGPKGPGLIILLPGIDKMVKVDLRTVTLDVPPQDIITRDNVS
VKVSAVVYFRVLDSMKAILDVADFHFATSQLAQTTLRSVCGQGELDNLLAERDEINERIQNILDKDTEPWGVKVSKVEVK
EIDLPEEMRRAMAKQAEAERERRSKIINAEGEFQAAQRLADAAAIISSAPAALQLRYLQTLKDIAGQNNSTTIFPVPIDL
LRAFMENK
>Mature_248_residues
MLTFNVLTVLILVGVFFFSAVKILREYERGVIFRLGRAIGPKGPGLIILLPGIDKMVKVDLRTVTLDVPPQDIITRDNVS
VKVSAVVYFRVLDSMKAILDVADFHFATSQLAQTTLRSVCGQGELDNLLAERDEINERIQNILDKDTEPWGVKVSKVEVK
EIDLPEEMRRAMAKQAEAERERRSKIINAEGEFQAAQRLADAAAIISSAPAALQLRYLQTLKDIAGQNNSTTIFPVPIDL
LRAFMENK

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI21686995, Length=246, Percent_Identity=47.9674796747967, Blast_Score=233, Evalue=1e-61,
Organism=Homo sapiens, GI221316744, Length=246, Percent_Identity=47.9674796747967, Blast_Score=233, Evalue=1e-61,
Organism=Homo sapiens, GI38016911, Length=250, Percent_Identity=46.8, Blast_Score=228, Evalue=3e-60,
Organism=Homo sapiens, GI7657615, Length=244, Percent_Identity=37.2950819672131, Blast_Score=162, Evalue=2e-40,
Organism=Homo sapiens, GI7305503, Length=178, Percent_Identity=34.8314606741573, Blast_Score=122, Evalue=2e-28,
Organism=Homo sapiens, GI20149563, Length=158, Percent_Identity=34.8101265822785, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI38016907, Length=64, Percent_Identity=53.125, Blast_Score=75, Evalue=6e-14,
Organism=Escherichia coli, GI1786697, Length=197, Percent_Identity=36.0406091370558, Blast_Score=136, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI71987612, Length=249, Percent_Identity=49.3975903614458, Blast_Score=228, Evalue=3e-60,
Organism=Caenorhabditis elegans, GI25153583, Length=249, Percent_Identity=49.3975903614458, Blast_Score=227, Evalue=4e-60,
Organism=Caenorhabditis elegans, GI71987621, Length=249, Percent_Identity=49.3975903614458, Blast_Score=226, Evalue=6e-60,
Organism=Caenorhabditis elegans, GI193210507, Length=245, Percent_Identity=48.1632653061224, Blast_Score=216, Evalue=7e-57,
Organism=Caenorhabditis elegans, GI17570161, Length=245, Percent_Identity=48.1632653061224, Blast_Score=216, Evalue=8e-57,
Organism=Caenorhabditis elegans, GI17569499, Length=245, Percent_Identity=46.530612244898, Blast_Score=216, Evalue=1e-56,
Organism=Caenorhabditis elegans, GI17570459, Length=247, Percent_Identity=44.1295546558704, Blast_Score=214, Evalue=3e-56,
Organism=Caenorhabditis elegans, GI17569497, Length=232, Percent_Identity=45.2586206896552, Blast_Score=213, Evalue=8e-56,
Organism=Caenorhabditis elegans, GI17569493, Length=241, Percent_Identity=43.9834024896266, Blast_Score=212, Evalue=2e-55,
Organism=Caenorhabditis elegans, GI193209764, Length=241, Percent_Identity=43.9834024896266, Blast_Score=211, Evalue=2e-55,
Organism=Caenorhabditis elegans, GI71989948, Length=232, Percent_Identity=49.1379310344828, Blast_Score=211, Evalue=3e-55,
Organism=Caenorhabditis elegans, GI32566490, Length=215, Percent_Identity=49.7674418604651, Blast_Score=199, Evalue=9e-52,
Organism=Caenorhabditis elegans, GI71989955, Length=183, Percent_Identity=51.3661202185792, Blast_Score=169, Evalue=1e-42,
Organism=Caenorhabditis elegans, GI71989963, Length=120, Percent_Identity=54.1666666666667, Blast_Score=131, Evalue=2e-31,
Organism=Caenorhabditis elegans, GI32564147, Length=197, Percent_Identity=37.0558375634518, Blast_Score=126, Evalue=8e-30,
Organism=Caenorhabditis elegans, GI17542664, Length=171, Percent_Identity=28.6549707602339, Blast_Score=77, Evalue=7e-15,
Organism=Drosophila melanogaster, GI45556022, Length=249, Percent_Identity=49.3975903614458, Blast_Score=233, Evalue=9e-62,
Organism=Drosophila melanogaster, GI18860517, Length=243, Percent_Identity=48.9711934156379, Blast_Score=226, Evalue=1e-59,
Organism=Drosophila melanogaster, GI24657857, Length=250, Percent_Identity=47.6, Blast_Score=221, Evalue=4e-58,
Organism=Drosophila melanogaster, GI62484448, Length=250, Percent_Identity=47.6, Blast_Score=220, Evalue=6e-58,
Organism=Drosophila melanogaster, GI281365664, Length=250, Percent_Identity=47.6, Blast_Score=219, Evalue=9e-58,
Organism=Drosophila melanogaster, GI62484274, Length=250, Percent_Identity=47.6, Blast_Score=219, Evalue=1e-57,
Organism=Drosophila melanogaster, GI28573263, Length=249, Percent_Identity=41.7670682730924, Blast_Score=209, Evalue=2e-54,
Organism=Drosophila melanogaster, GI21356845, Length=240, Percent_Identity=41.6666666666667, Blast_Score=194, Evalue=5e-50,
Organism=Drosophila melanogaster, GI281361631, Length=238, Percent_Identity=39.9159663865546, Blast_Score=182, Evalue=2e-46,
Organism=Drosophila melanogaster, GI281361633, Length=238, Percent_Identity=39.9159663865546, Blast_Score=182, Evalue=3e-46,
Organism=Drosophila melanogaster, GI281361635, Length=185, Percent_Identity=39.4594594594595, Blast_Score=144, Evalue=6e-35,
Organism=Drosophila melanogaster, GI45550506, Length=178, Percent_Identity=38.7640449438202, Blast_Score=127, Evalue=5e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 27664; Mature: 27664

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: PS01270 BAND_7

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTFNVLTVLILVGVFFFSAVKILREYERGVIFRLGRAIGPKGPGLIILLPGIDKMVKVD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHEEE
LRTVTLDVPPQDIITRDNVSVKVSAVVYFRVLDSMKAILDVADFHFATSQLAQTTLRSVC
EEEEEEECCCHHHEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GQGELDNLLAERDEINERIQNILDKDTEPWGVKVSKVEVKEIDLPEEMRRAMAKQAEAER
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHCCCHHHHHHHHHHHHHHHH
ERRSKIINAEGEFQAAQRLADAAAIISSAPAALQLRYLQTLKDIAGQNNSTTIFPVPIDL
HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEECCHHH
LRAFMENK
HHHHHCCC
>Mature Secondary Structure
MLTFNVLTVLILVGVFFFSAVKILREYERGVIFRLGRAIGPKGPGLIILLPGIDKMVKVD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHEEE
LRTVTLDVPPQDIITRDNVSVKVSAVVYFRVLDSMKAILDVADFHFATSQLAQTTLRSVC
EEEEEEECCCHHHEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GQGELDNLLAERDEINERIQNILDKDTEPWGVKVSKVEVKEIDLPEEMRRAMAKQAEAER
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHCCCHHHHHHHHHHHHHHHH
ERRSKIINAEGEFQAAQRLADAAAIISSAPAALQLRYLQTLKDIAGQNNSTTIFPVPIDL
HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEECCHHH
LRAFMENK
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]