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The map label for this gene is yvrB [H]

Identifier: 119356941

GI number: 119356941

Start: 1267570

End: 1268601

Strand: Direct

Name: yvrB [H]

Synonym: Cpha266_1121

Alternate gene names: 119356941

Gene position: 1267570-1268601 (Clockwise)

Preceding gene: 119356940

Following gene: 119356942

Centisome position: 40.45

GC content: 54.07

Gene sequence:

>1032_bases
ATGAACCGTTCAAAAGAGTGTATCGATAATCGATTTACCGGAAAGCAGTATAAACAGTCGCGAGGCAAGCTGATTTTGTT
TCTTCTTGCCGTTCCGTTGCTGCTTCTGCTCTCCCTGCTGCTTGGAGCTTCGGGAATCGGCATCCCCGATCCTGCTCTGC
CGGCAGGAAAAGCAATTATCGGCCTGCGCGTCGGAAGAATGCTGATGGGCCTGATGGTCGGAGCTGCACTTTCGGCATCA
GGCGTCGTTTTTCAGGCGCTCCTGCGAAATCCGCTTGCCGAACCCTATGTGCTTGGTGTCAGCGGCGGGGCCGGACTTGG
CGCAACGTTCAGTATTCTTGCCGGCGGATCGTTGTTTCTTCCCTTCAGTCTTCCGGTTGTCGCCTTTGTTTCAGCCCTTG
TAACCCTTCTTATCGTTTACATGATAGCAAGCCAGGGTGGAGGAGGGGCCCCTTCGGTTTACAGTCTCATTCTGAGCGGC
GTGATTGTCAGCGCCATTGCGTCAAGCATCATCATGTTTCTTGTCTCCTCGGCCAGTGTTGAGGGGATGCACAATGTTAT
CTGGTGGATGCTTGGCAGTCTGCAGCCCGTTTCGCGTGAGCAGGAGATCTTTTCAGCATTGCTTGTTGTTGCGGGACTTC
TGGGGAGCTGGGCGCTCTCGGCAAAGCTCAACGCACTGACGCTTGGACGAGAGATGGCTCACTATCAGGGTATCAACGCG
GATCTTGTTATTATCGGTGGACTCTTCTGGGCAACCCTTCTTGCAGCAACAGCGGTTTCTCTCTCAGGTATGATCGGGTT
TGTCGGTCTTATTGTTCCGCACGTCATGCGTGCAATGTTCGGGCCCGACCACAAAAAACTTCTTCCGCTTGCTGCCCTTG
GAGGCGGCACGTTTCTGGTGCTGTGCGATGCGCTTGCAAGAACGGTCATTGCTCCCATCGAGATTCCTGTTGGCGTGGTG
ACCGCTCTTGCGGGAGGCCCGTTTTTTCTCGTTATTCTGCAGCGCAGGATGAAACAGGCATGGATTGCATAA

Upstream 100 bases:

>100_bases
GCTTATTGCCGTCGCCGATACGGTTACTGAAATGGGCATGATCAAGCACGGGTTTGAACAGGGAATCCCGGCACAGATCG
GGGTGGAAAACTGAGGCTGC

Downstream 100 bases:

>100_bases
AATGAATAAAACCGTCCTGACATTCGAGAGTGTTTCTTCCGGTTACAAGCATCGGCCTGTGCTGTACGATATCACGTTCA
GCGTTGCTGAAGGGGAGTTT

Product: transport system permease protein

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MNRSKECIDNRFTGKQYKQSRGKLILFLLAVPLLLLLSLLLGASGIGIPDPALPAGKAIIGLRVGRMLMGLMVGAALSAS
GVVFQALLRNPLAEPYVLGVSGGAGLGATFSILAGGSLFLPFSLPVVAFVSALVTLLIVYMIASQGGGGAPSVYSLILSG
VIVSAIASSIIMFLVSSASVEGMHNVIWWMLGSLQPVSREQEIFSALLVVAGLLGSWALSAKLNALTLGREMAHYQGINA
DLVIIGGLFWATLLAATAVSLSGMIGFVGLIVPHVMRAMFGPDHKKLLPLAALGGGTFLVLCDALARTVIAPIEIPVGVV
TALAGGPFFLVILQRRMKQAWIA

Sequences:

>Translated_343_residues
MNRSKECIDNRFTGKQYKQSRGKLILFLLAVPLLLLLSLLLGASGIGIPDPALPAGKAIIGLRVGRMLMGLMVGAALSAS
GVVFQALLRNPLAEPYVLGVSGGAGLGATFSILAGGSLFLPFSLPVVAFVSALVTLLIVYMIASQGGGGAPSVYSLILSG
VIVSAIASSIIMFLVSSASVEGMHNVIWWMLGSLQPVSREQEIFSALLVVAGLLGSWALSAKLNALTLGREMAHYQGINA
DLVIIGGLFWATLLAATAVSLSGMIGFVGLIVPHVMRAMFGPDHKKLLPLAALGGGTFLVLCDALARTVIAPIEIPVGVV
TALAGGPFFLVILQRRMKQAWIA
>Mature_343_residues
MNRSKECIDNRFTGKQYKQSRGKLILFLLAVPLLLLLSLLLGASGIGIPDPALPAGKAIIGLRVGRMLMGLMVGAALSAS
GVVFQALLRNPLAEPYVLGVSGGAGLGATFSILAGGSLFLPFSLPVVAFVSALVTLLIVYMIASQGGGGAPSVYSLILSG
VIVSAIASSIIMFLVSSASVEGMHNVIWWMLGSLQPVSREQEIFSALLVVAGLLGSWALSAKLNALTLGREMAHYQGINA
DLVIIGGLFWATLLAATAVSLSGMIGFVGLIVPHVMRAMFGPDHKKLLPLAALGGGTFLVLCDALARTVIAPIEIPVGVV
TALAGGPFFLVILQRRMKQAWIA

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0609

COG function: function code P; ABC-type Fe3+-siderophore transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790740, Length=277, Percent_Identity=36.4620938628159, Blast_Score=128, Evalue=6e-31,
Organism=Escherichia coli, GI1788004, Length=300, Percent_Identity=35, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1790741, Length=287, Percent_Identity=30.6620209059233, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786805, Length=260, Percent_Identity=33.8461538461538, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786347, Length=285, Percent_Identity=32.280701754386, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1786804, Length=277, Percent_Identity=30.6859205776173, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000522 [H]

Pfam domain/function: PF01032 FecCD [H]

EC number: NA

Molecular weight: Translated: 35611; Mature: 35611

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRSKECIDNRFTGKQYKQSRGKLILFLLAVPLLLLLSLLLGASGIGIPDPALPAGKAII
CCCCHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
GLRVGRMLMGLMVGAALSASGVVFQALLRNPLAEPYVLGVSGGAGLGATFSILAGGSLFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCCCEEE
PFSLPVVAFVSALVTLLIVYMIASQGGGGAPSVYSLILSGVIVSAIASSIIMFLVSSASV
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGMHNVIWWMLGSLQPVSREQEIFSALLVVAGLLGSWALSAKLNALTLGREMAHYQGINA
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DLVIIGGLFWATLLAATAVSLSGMIGFVGLIVPHVMRAMFGPDHKKLLPLAALGGGTFLV
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHH
LCDALARTVIAPIEIPVGVVTALAGGPFFLVILQRRMKQAWIA
HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNRSKECIDNRFTGKQYKQSRGKLILFLLAVPLLLLLSLLLGASGIGIPDPALPAGKAII
CCCCHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
GLRVGRMLMGLMVGAALSASGVVFQALLRNPLAEPYVLGVSGGAGLGATFSILAGGSLFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCCCEEE
PFSLPVVAFVSALVTLLIVYMIASQGGGGAPSVYSLILSGVIVSAIASSIIMFLVSSASV
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGMHNVIWWMLGSLQPVSREQEIFSALLVVAGLLGSWALSAKLNALTLGREMAHYQGINA
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DLVIIGGLFWATLLAATAVSLSGMIGFVGLIVPHVMRAMFGPDHKKLLPLAALGGGTFLV
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHH
LCDALARTVIAPIEIPVGVVTALAGGPFFLVILQRRMKQAWIA
HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]