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The map label for this gene is ybbN [H]

Identifier: 119356806

GI number: 119356806

Start: 1120189

End: 1120980

Strand: Direct

Name: ybbN [H]

Synonym: Cpha266_0979

Alternate gene names: 119356806

Gene position: 1120189-1120980 (Clockwise)

Preceding gene: 119356803

Following gene: 119356807

Centisome position: 35.74

GC content: 49.49

Gene sequence:

>792_bases
ATGTTTGATTTTCAGGTCGAGGTTATTGAACAAAGTCATACTCTCCCTGTGCTTGTCGATTTCTGGGCGGAGTGGTGTGC
TCCTTGTCGCATGCTTGGCCCTGTTCTTGAAAAGCTTGCTGCTAAATATACAGGGTCATGGAGGCTTGTTAAAATCAATA
CCGGCGAGTTTCCCGAGCTTGCTGAACGGTATCAGGTTAGAGGTATTCCGGATGTGAAACTGTTTGTTGCCGGTGAGGCT
GTCGACGGGTTTTCCGGAGCACTTTCGGAGTATCAGATAGAGCAGTGGCTGAAAAAGGCTGTTCCCGATCCTTACGCCAG
GACTGTTGCTCTTGCCGAAACATTGCTTGCGGAGGGGCGTAAAGTTGATGCAAAACGTCTTCTTGAGGATGTTCTGCGGG
AGAGCCCCGATAATCTCCAGGCGCTTGCGCTCCAGGCCCGAATACTTCTGTTTTGTGAACCGGAGGAAGCGCTCAGGTTG
ATTACTCTGCTGAACGATGAGCCGGACTATGCTGAGCTTTCTGAAACTGTTCGAGTGATCGGCCGATTGTTGATGCAGGA
GGAAGCGAATTTTGCGGACAGTCCGGTAAAAGACAGCTATCTGGCTGCAATTGCTGCTATCAGGAGTGAGCATTATGATG
AAGCGATTGAGCAGTTCATTCAGGTGCTTCGTGAAGACCGGTATTACGATGATGATGGATCGCGAAAAGCCTGTATTGCA
CTTTTCAGGTATCTTGGCCAGGAGCATCCGGTTACATTGCGTCACCGTCGGGCATTTGATCGTTCTTTTTAA

Upstream 100 bases:

>100_bases
CAGCATATCATGGCCGAGGTGTTGAAGGTTCCTGGCTTAGCCAGGGTCTTGAGGATTTTTTTGATGTTTATTAAAATTAG
CCGGTGTTATGGAGAACAAC

Downstream 100 bases:

>100_bases
AGAAGATGCGAATCTCCGGGCTTATTGGATGAACGTTTTTCGATTGCCCGAAACCGGAAAGTCGTTAAACCCTTGAGGGA
GCTATGCCGGAAAAACAAAA

Product: thioredoxin domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MFDFQVEVIEQSHTLPVLVDFWAEWCAPCRMLGPVLEKLAAKYTGSWRLVKINTGEFPELAERYQVRGIPDVKLFVAGEA
VDGFSGALSEYQIEQWLKKAVPDPYARTVALAETLLAEGRKVDAKRLLEDVLRESPDNLQALALQARILLFCEPEEALRL
ITLLNDEPDYAELSETVRVIGRLLMQEEANFADSPVKDSYLAAIAAIRSEHYDEAIEQFIQVLREDRYYDDDGSRKACIA
LFRYLGQEHPVTLRHRRAFDRSF

Sequences:

>Translated_263_residues
MFDFQVEVIEQSHTLPVLVDFWAEWCAPCRMLGPVLEKLAAKYTGSWRLVKINTGEFPELAERYQVRGIPDVKLFVAGEA
VDGFSGALSEYQIEQWLKKAVPDPYARTVALAETLLAEGRKVDAKRLLEDVLRESPDNLQALALQARILLFCEPEEALRL
ITLLNDEPDYAELSETVRVIGRLLMQEEANFADSPVKDSYLAAIAAIRSEHYDEAIEQFIQVLREDRYYDDDGSRKACIA
LFRYLGQEHPVTLRHRRAFDRSF
>Mature_263_residues
MFDFQVEVIEQSHTLPVLVDFWAEWCAPCRMLGPVLEKLAAKYTGSWRLVKINTGEFPELAERYQVRGIPDVKLFVAGEA
VDGFSGALSEYQIEQWLKKAVPDPYARTVALAETLLAEGRKVDAKRLLEDVLRESPDNLQALALQARILLFCEPEEALRL
ITLLNDEPDYAELSETVRVIGRLLMQEEANFADSPVKDSYLAAIAAIRSEHYDEAIEQFIQVLREDRYYDDDGSRKACIA
LFRYLGQEHPVTLRHRRAFDRSF

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI21361403, Length=99, Percent_Identity=41.4141414141414, Blast_Score=82, Evalue=3e-16,
Organism=Escherichia coli, GI87081747, Length=263, Percent_Identity=30.4182509505703, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788936, Length=87, Percent_Identity=40.2298850574713, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI87082331, Length=94, Percent_Identity=40.4255319148936, Blast_Score=87, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI212646193, Length=96, Percent_Identity=43.75, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17509965, Length=94, Percent_Identity=34.0425531914894, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28573567, Length=102, Percent_Identity=37.2549019607843, Blast_Score=78, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 30098; Mature: 30098

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS00194 THIOREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDFQVEVIEQSHTLPVLVDFWAEWCAPCRMLGPVLEKLAAKYTGSWRLVKINTGEFPEL
CCCCEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHH
AERYQVRGIPDVKLFVAGEAVDGFSGALSEYQIEQWLKKAVPDPYARTVALAETLLAEGR
HHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
KVDAKRLLEDVLRESPDNLQALALQARILLFCEPEEALRLITLLNDEPDYAELSETVRVI
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHEEECHHHHHHHHHHHCCCCCHHHHHHHHHHH
GRLLMQEEANFADSPVKDSYLAAIAAIRSEHYDEAIEQFIQVLREDRYYDDDGSRKACIA
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
LFRYLGQEHPVTLRHRRAFDRSF
HHHHHCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MFDFQVEVIEQSHTLPVLVDFWAEWCAPCRMLGPVLEKLAAKYTGSWRLVKINTGEFPEL
CCCCEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHH
AERYQVRGIPDVKLFVAGEAVDGFSGALSEYQIEQWLKKAVPDPYARTVALAETLLAEGR
HHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
KVDAKRLLEDVLRESPDNLQALALQARILLFCEPEEALRLITLLNDEPDYAELSETVRVI
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHEEECHHHHHHHHHHHCCCCCHHHHHHHHHHH
GRLLMQEEANFADSPVKDSYLAAIAAIRSEHYDEAIEQFIQVLREDRYYDDDGSRKACIA
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
LFRYLGQEHPVTLRHRRAFDRSF
HHHHHCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]