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The map label for this gene is cydA [H]

Identifier: 118480263

GI number: 118480263

Start: 4969015

End: 4970397

Strand: Direct

Name: cydA [H]

Synonym: BALH_4722

Alternate gene names: 118480263

Gene position: 4969015-4970397 (Clockwise)

Preceding gene: 118480261

Following gene: 118480264

Centisome position: 94.52

GC content: 42.52

Gene sequence:

>1383_bases
ATGGCAAAAAAGAAGAGGAGTTTACATATGGATACGGTAACATTAGCAAGAGCATTTTTCGGTTCTTCACTAGCATTCCA
CATTATCTTCGCAACACTTGGTGTCGGACTTTCATTGATGATTTTTATAAGTGAAATACTCTATCACTGGAAGAAAGATT
CCGACTACGCCATTATGGCGAAAAGGTGGACAAAGGCTTTTGCCATCCTTCTCGGTGTAGCAATTCCAACTGGAACAATT
GTCGGTGTGCAAATCTCACTTCTTTGGCCTGGTTTTGCCAAAATTGTTGGGCAGGTTATTTCTGTTCCCTTTCAAATTGA
GATTTTCGCCTTCTTTTTAGAAGCTTTGTTCATGTCCATTTATGTATATGCAGCTGACAAACTACCTCCATTCATGAGAT
TAATCTCGTTATTCTTCGTCATGATTGGTGCCACGGCATCCGCCGTGCTTATTACATCAGCAAATACATGGATGAATACA
CCCGCGGGCTTCTCAATGGGGCCAGATGGATCAGTTTTTAACGTTGATCCGTGGAAAGCTTTCTTTAATCCGAGTTTTGG
CACAAGCGCATTCCACGTTGTGATTACAGCCTATGCAACTGGAGCTGCCGTCATTGCCTCTATCGCTGGATTTAAATTAT
TAAAGAAGAATTTAAGTGAACGTGAAGTAGCGTATCATAAAAAAGGCCTACTGTTAGGACTCGTCGTAACATTTATTACA
GGCGCTACGATGTGGCTTTCGGGACATGAATCGGCAATTGCCTTACATAAGCATTCCCCTGAAAAACTGGCATCTGCTGA
AGCTTTATTTGAAACGACATCACATGCACCGTTATCCATTGGCGGCGTTGTAGATCCTAACACACTTGAACTAAACTATG
CACTTGAAATTCCGAACATGCTTAGCCTACTAGTGGGACTAGACCCTAACACCGTCGTAAAAGGTCTAAATGAATTTCCA
CAAGAAACATGGCCACCATTTTACACACATACACTGTTCAATTTAATGGTCGGCACTGCTGCCTTCACCTTTGCAGTTGC
AGCAATTGCCCTCTTATATTGGTACTTTGTTTACCGAAAAAAAGGGGCCGAACTACCGAAGTGGCTTCTTTGGGGAGCTG
CCGCATGTGGACCAGTTATGATGCTCGGCATTGAATTCGGATGGATTTTCAGCTGTAGCGGTCGTCAACCGTGGACCATT
TACGGTATGCAACGTACAGTCGACGCTTCTACACGCGCTGATTTTGTCGGTCCTTTATTTATTCTATTCATCATTTTATA
TATTGGACTCGGTATTTTAACAGTCTTTGTGCTACGGACATTCTTTAAGAAACATCCGCTTACAAATGATTTACATCACG
AAGGAGGCGATTCTCGTGCATGA

Upstream 100 bases:

>100_bases
TTCATAATATTCAATCATCATATTAACATATCCATTTTTTAAATACATATATATTTTTGGTAGTTTTTTTGAATAAATCT
TCCAATTCAATCAGAAAATA

Downstream 100 bases:

>100_bases
GGAAAGTATTGCAATCATCATCTTATGGGCCCTTATTTTCGTATACAGTATATTAGGATCCATCGATTTTGGGGCAGGTT
TTTGGGGCATGGTATACGCA

Product: cytochrome d ubiquinol oxidase, subunit I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 460; Mature: 459

Protein sequence:

>460_residues
MAKKKRSLHMDTVTLARAFFGSSLAFHIIFATLGVGLSLMIFISEILYHWKKDSDYAIMAKRWTKAFAILLGVAIPTGTI
VGVQISLLWPGFAKIVGQVISVPFQIEIFAFFLEALFMSIYVYAADKLPPFMRLISLFFVMIGATASAVLITSANTWMNT
PAGFSMGPDGSVFNVDPWKAFFNPSFGTSAFHVVITAYATGAAVIASIAGFKLLKKNLSEREVAYHKKGLLLGLVVTFIT
GATMWLSGHESAIALHKHSPEKLASAEALFETTSHAPLSIGGVVDPNTLELNYALEIPNMLSLLVGLDPNTVVKGLNEFP
QETWPPFYTHTLFNLMVGTAAFTFAVAAIALLYWYFVYRKKGAELPKWLLWGAAACGPVMMLGIEFGWIFSCSGRQPWTI
YGMQRTVDASTRADFVGPLFILFIILYIGLGILTVFVLRTFFKKHPLTNDLHHEGGDSRA

Sequences:

>Translated_460_residues
MAKKKRSLHMDTVTLARAFFGSSLAFHIIFATLGVGLSLMIFISEILYHWKKDSDYAIMAKRWTKAFAILLGVAIPTGTI
VGVQISLLWPGFAKIVGQVISVPFQIEIFAFFLEALFMSIYVYAADKLPPFMRLISLFFVMIGATASAVLITSANTWMNT
PAGFSMGPDGSVFNVDPWKAFFNPSFGTSAFHVVITAYATGAAVIASIAGFKLLKKNLSEREVAYHKKGLLLGLVVTFIT
GATMWLSGHESAIALHKHSPEKLASAEALFETTSHAPLSIGGVVDPNTLELNYALEIPNMLSLLVGLDPNTVVKGLNEFP
QETWPPFYTHTLFNLMVGTAAFTFAVAAIALLYWYFVYRKKGAELPKWLLWGAAACGPVMMLGIEFGWIFSCSGRQPWTI
YGMQRTVDASTRADFVGPLFILFIILYIGLGILTVFVLRTFFKKHPLTNDLHHEGGDSRA
>Mature_459_residues
AKKKRSLHMDTVTLARAFFGSSLAFHIIFATLGVGLSLMIFISEILYHWKKDSDYAIMAKRWTKAFAILLGVAIPTGTIV
GVQISLLWPGFAKIVGQVISVPFQIEIFAFFLEALFMSIYVYAADKLPPFMRLISLFFVMIGATASAVLITSANTWMNTP
AGFSMGPDGSVFNVDPWKAFFNPSFGTSAFHVVITAYATGAAVIASIAGFKLLKKNLSEREVAYHKKGLLLGLVVTFITG
ATMWLSGHESAIALHKHSPEKLASAEALFETTSHAPLSIGGVVDPNTLELNYALEIPNMLSLLVGLDPNTVVKGLNEFPQ
ETWPPFYTHTLFNLMVGTAAFTFAVAAIALLYWYFVYRKKGAELPKWLLWGAAACGPVMMLGIEFGWIFSCSGRQPWTIY
GMQRTVDASTRADFVGPLFILFIILYIGLGILTVFVLRTFFKKHPLTNDLHHEGGDSRA

Specific function: Probable cytochrome [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=319, Percent_Identity=28.5266457680251, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI87081779, Length=319, Percent_Identity=26.9592476489028, Blast_Score=113, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 50596; Mature: 50465

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKKRSLHMDTVTLARAFFGSSLAFHIIFATLGVGLSLMIFISEILYHWKKDSDYAIMA
CCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
KRWTKAFAILLGVAIPTGTIVGVQISLLWPGFAKIVGQVISVPFQIEIFAFFLEALFMSI
HHHHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
YVYAADKLPPFMRLISLFFVMIGATASAVLITSANTWMNTPAGFSMGPDGSVFNVDPWKA
HHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHH
FFNPSFGTSAFHVVITAYATGAAVIASIAGFKLLKKNLSEREVAYHKKGLLLGLVVTFIT
HCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHC
GATMWLSGHESAIALHKHSPEKLASAEALFETTSHAPLSIGGVVDPNTLELNYALEIPNM
CCCEEECCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEEEECCHHH
LSLLVGLDPNTVVKGLNEFPQETWPPFYTHTLFNLMVGTAAFTFAVAAIALLYWYFVYRK
HHHHHCCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGAELPKWLLWGAAACGPVMMLGIEFGWIFSCSGRQPWTIYGMQRTVDASTRADFVGPLF
CCCCCCHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCEEEECCCEECCCHHHHHHHHHHH
ILFIILYIGLGILTVFVLRTFFKKHPLTNDLHHEGGDSRA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCC
>Mature Secondary Structure 
AKKKRSLHMDTVTLARAFFGSSLAFHIIFATLGVGLSLMIFISEILYHWKKDSDYAIMA
CCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
KRWTKAFAILLGVAIPTGTIVGVQISLLWPGFAKIVGQVISVPFQIEIFAFFLEALFMSI
HHHHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
YVYAADKLPPFMRLISLFFVMIGATASAVLITSANTWMNTPAGFSMGPDGSVFNVDPWKA
HHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHH
FFNPSFGTSAFHVVITAYATGAAVIASIAGFKLLKKNLSEREVAYHKKGLLLGLVVTFIT
HCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHC
GATMWLSGHESAIALHKHSPEKLASAEALFETTSHAPLSIGGVVDPNTLELNYALEIPNM
CCCEEECCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEEEECCHHH
LSLLVGLDPNTVVKGLNEFPQETWPPFYTHTLFNLMVGTAAFTFAVAAIALLYWYFVYRK
HHHHHCCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGAELPKWLLWGAAACGPVMMLGIEFGWIFSCSGRQPWTIYGMQRTVDASTRADFVGPLF
CCCCCCHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCEEEECCCEECCCHHHHHHHHHHH
ILFIILYIGLGILTVFVLRTFFKKHPLTNDLHHEGGDSRA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]