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The map label for this gene is yybE [H]

Identifier: 118480261

GI number: 118480261

Start: 4966530

End: 4967414

Strand: Direct

Name: yybE [H]

Synonym: BALH_4719

Alternate gene names: 118480261

Gene position: 4966530-4967414 (Clockwise)

Preceding gene: 118480259

Following gene: 118480263

Centisome position: 94.47

GC content: 37.63

Gene sequence:

>885_bases
ATGGAACTTCTTCAACTAAAATACTTTCAAACAGTCGCAAGATTAGAGCATATGACAAAAGCCGCTGAAGAATTGCATAT
CGCACAACCTTCGCTCAGCAAAACAATTGCTAGATTAGAAAAGGACTTAGGCGTTCCGTTATTTGACCGCCAAGGGCGAC
AAATTACATTAAACGCTTTCGGGAAAGTATTTTTAAAACGAGTAGAGCGCATTTTTCATGAATTAAGTGAAGGTGAACGA
GAAATTAAAGATTTAGCTGACTTACAACAAAGCTCTATTACGCTGGCTGTTTCTATTCCAAGAATATTACCAGAACTAAT
CGGTTCTTTTTTACTAGAACATCCTAACGTTCGATTCCAGCAATTTCTCGCATCTACTCCTTCTATGAAACGACAACTAG
ATAATATAGAAATTGACTTTTGTATTTCTTCTGTGCCAATTCAAGGCGAAGAGATTATTTGGGAGCCACTTATTACAGAA
GAAATTTTCTTAGTCGTCCCTTCAGGCCATCGTTTATCAGGGCGTGAAAGTATCTATCTGCATGAAGTAAAAGATGAACC
GTTCATTAGTATGAACACTGGTTACGGATTTCGACACTTAACAGATGAATTTTGTAAAGAAGCTGGATTCACGCCACATA
TCGCTTTTGAAGTAGATGAACCAACCGTAATTAGCGATCTCATTAAGCAAGGTCTCGGCATCGCCTTTGTCCCAAGTTTA
ACTTTATTAAAAAACTCTACTTTAGCATTAAATAAGTTACGTATTATGGAACCCGTTTGTAAGCGAACGATTGGCTTAAG
TTGGTCCAAAAAACGTTACTTATCGAAAACCGCCCAGCAATTCCGTGAATTTGTGATTGATTACTTCTCCAATATTAGGG
CGTAA

Upstream 100 bases:

>100_bases
AATGGTTTAACAGATTTACTATACACGTCCATTTCCATACTGTATAATACATCTTTAATTATCAATTCATTCCTTTTGGT
CTATAGAAAGGAGAATCAAA

Downstream 100 bases:

>100_bases
AATGATATCAATAAATAAAAGATGCCATCCCGATAGGGTGGCACCTTCTATTGTTCACTTTTCTCTAATTCTATTTCAGC
TAAAAGCGGTAGTACGTTAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MELLQLKYFQTVARLEHMTKAAEELHIAQPSLSKTIARLEKDLGVPLFDRQGRQITLNAFGKVFLKRVERIFHELSEGER
EIKDLADLQQSSITLAVSIPRILPELIGSFLLEHPNVRFQQFLASTPSMKRQLDNIEIDFCISSVPIQGEEIIWEPLITE
EIFLVVPSGHRLSGRESIYLHEVKDEPFISMNTGYGFRHLTDEFCKEAGFTPHIAFEVDEPTVISDLIKQGLGIAFVPSL
TLLKNSTLALNKLRIMEPVCKRTIGLSWSKKRYLSKTAQQFREFVIDYFSNIRA

Sequences:

>Translated_294_residues
MELLQLKYFQTVARLEHMTKAAEELHIAQPSLSKTIARLEKDLGVPLFDRQGRQITLNAFGKVFLKRVERIFHELSEGER
EIKDLADLQQSSITLAVSIPRILPELIGSFLLEHPNVRFQQFLASTPSMKRQLDNIEIDFCISSVPIQGEEIIWEPLITE
EIFLVVPSGHRLSGRESIYLHEVKDEPFISMNTGYGFRHLTDEFCKEAGFTPHIAFEVDEPTVISDLIKQGLGIAFVPSL
TLLKNSTLALNKLRIMEPVCKRTIGLSWSKKRYLSKTAQQFREFVIDYFSNIRA
>Mature_294_residues
MELLQLKYFQTVARLEHMTKAAEELHIAQPSLSKTIARLEKDLGVPLFDRQGRQITLNAFGKVFLKRVERIFHELSEGER
EIKDLADLQQSSITLAVSIPRILPELIGSFLLEHPNVRFQQFLASTPSMKRQLDNIEIDFCISSVPIQGEEIIWEPLITE
EIFLVVPSGHRLSGRESIYLHEVKDEPFISMNTGYGFRHLTDEFCKEAGFTPHIAFEVDEPTVISDLIKQGLGIAFVPSL
TLLKNSTLALNKLRIMEPVCKRTIGLSWSKKRYLSKTAQQFREFVIDYFSNIRA

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=286, Percent_Identity=30.0699300699301, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI145693105, Length=293, Percent_Identity=26.2798634812287, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1790399, Length=293, Percent_Identity=24.5733788395904, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI2367136, Length=252, Percent_Identity=29.3650793650794, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1788887, Length=243, Percent_Identity=27.9835390946502, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787879, Length=291, Percent_Identity=26.8041237113402, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787530, Length=250, Percent_Identity=24.8, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1788748, Length=303, Percent_Identity=25.0825082508251, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788296, Length=247, Percent_Identity=27.5303643724696, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1789204, Length=270, Percent_Identity=24.4444444444444, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1788481, Length=285, Percent_Identity=23.1578947368421, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787601, Length=182, Percent_Identity=31.3186813186813, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787806, Length=246, Percent_Identity=26.4227642276423, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87081904, Length=259, Percent_Identity=28.957528957529, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788297, Length=299, Percent_Identity=22.4080267558528, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1790208, Length=305, Percent_Identity=23.9344262295082, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789506, Length=293, Percent_Identity=22.1843003412969, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33674; Mature: 33674

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLQLKYFQTVARLEHMTKAAEELHIAQPSLSKTIARLEKDLGVPLFDRQGRQITLNAF
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEHHHH
GKVFLKRVERIFHELSEGEREIKDLADLQQSSITLAVSIPRILPELIGSFLLEHPNVRFQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHCCCCHHHH
QFLASTPSMKRQLDNIEIDFCISSVPIQGEEIIWEPLITEEIFLVVPSGHRLSGRESIYL
HHHHCCCHHHHHHCCCEEEEEEECCCCCCCHHEECCCCCCEEEEEECCCCCCCCCCCEEE
HEVKDEPFISMNTGYGFRHLTDEFCKEAGFTPHIAFEVDEPTVISDLIKQGLGIAFVPSL
EECCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCEEECCCH
TLLKNSTLALNKLRIMEPVCKRTIGLSWSKKRYLSKTAQQFREFVIDYFSNIRA
HHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MELLQLKYFQTVARLEHMTKAAEELHIAQPSLSKTIARLEKDLGVPLFDRQGRQITLNAF
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEHHHH
GKVFLKRVERIFHELSEGEREIKDLADLQQSSITLAVSIPRILPELIGSFLLEHPNVRFQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHCCCCHHHH
QFLASTPSMKRQLDNIEIDFCISSVPIQGEEIIWEPLITEEIFLVVPSGHRLSGRESIYL
HHHHCCCHHHHHHCCCEEEEEEECCCCCCCHHEECCCCCCEEEEEECCCCCCCCCCCEEE
HEVKDEPFISMNTGYGFRHLTDEFCKEAGFTPHIAFEVDEPTVISDLIKQGLGIAFVPSL
EECCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCEEECCCH
TLLKNSTLALNKLRIMEPVCKRTIGLSWSKKRYLSKTAQQFREFVIDYFSNIRA
HHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]