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The map label for this gene is 118479840

Identifier: 118479840

GI number: 118479840

Start: 4501053

End: 4501604

Strand: Reverse

Name: 118479840

Synonym: BALH_4278

Alternate gene names: NA

Gene position: 4501604-4501053 (Counterclockwise)

Preceding gene: 118479841

Following gene: 118479839

Centisome position: 85.63

GC content: 36.41

Gene sequence:

>552_bases
ATGTACATGGAGCCACATTATTTTGTCGCGATTACGTTACCAAATCATATAAAAGAAGTGCTGTCTAACTATAGAGAGGA
AATGCAGGAGGAATTACCATTTCGTTCGTGGGTACATAAAGAAGACTATCATATTACCCTTTCATTTTTAGGTAGTGCGA
CAGAGGAACAATTAGAAGGAATAAAGAATGGATTACAAACACTTATAGAAACGAAAGAACTATCGTTCACATTACAAGGG
TTTTCAACGTTTGGTATGGAAGACAGACCGCGTATTTTTTGGGCAAAGGTAAGCGAGAATCAAGATTTGTTTCCATTACA
AAAGCAAGTACACGCTATTTGTGAAGGGAATGGATTTTCTTTAGAAACGCGCCCGTATCATCCACATATTACTGTTGCTC
GTAAATGGGTAGGAGAAAAAAGGTTTGTTTTAGAACATATAAAGGAAGTGCCTGAAATATCATTTCAAGCGGATACGATT
ACTTTATACGAATCTCACGTGAAAGAAGCGCCGAAGTATAAAGCGATTGCTGAAATAAAATTACAAAAATAG

Upstream 100 bases:

>100_bases
TAATGGATATATAAATAATGACCGCTCTCTATTTTGGAGGGCGGCTTCTTTTTACCTGAATGAGATAAGAAAGAAAAGCA
ACAATAGAAAGAAGGAGAAG

Downstream 100 bases:

>100_bases
AATGTATGAAAACGTTTTTTATACAGGTGAATATACTATAAAGAACAATGTGTTACTGTATAGGGCTTCGCTGATAAGAA
AAGCCTTATCATTTGCAGCT

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: ORF3 [H]

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MYMEPHYFVAITLPNHIKEVLSNYREEMQEELPFRSWVHKEDYHITLSFLGSATEEQLEGIKNGLQTLIETKELSFTLQG
FSTFGMEDRPRIFWAKVSENQDLFPLQKQVHAICEGNGFSLETRPYHPHITVARKWVGEKRFVLEHIKEVPEISFQADTI
TLYESHVKEAPKYKAIAEIKLQK

Sequences:

>Translated_183_residues
MYMEPHYFVAITLPNHIKEVLSNYREEMQEELPFRSWVHKEDYHITLSFLGSATEEQLEGIKNGLQTLIETKELSFTLQG
FSTFGMEDRPRIFWAKVSENQDLFPLQKQVHAICEGNGFSLETRPYHPHITVARKWVGEKRFVLEHIKEVPEISFQADTI
TLYESHVKEAPKYKAIAEIKLQK
>Mature_183_residues
MYMEPHYFVAITLPNHIKEVLSNYREEMQEELPFRSWVHKEDYHITLSFLGSATEEQLEGIKNGLQTLIETKELSFTLQG
FSTFGMEDRPRIFWAKVSENQDLFPLQKQVHAICEGNGFSLETRPYHPHITVARKWVGEKRFVLEHIKEVPEISFQADTI
TLYESHVKEAPKYKAIAEIKLQK

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0097 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004175
- InterPro:   IPR014051
- InterPro:   IPR009097 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: NA

Molecular weight: Translated: 21468; Mature: 21468

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYMEPHYFVAITLPNHIKEVLSNYREEMQEELPFRSWVHKEDYHITLSFLGSATEEQLEG
CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEEECCCCCHHHHHH
IKNGLQTLIETKELSFTLQGFSTFGMEDRPRIFWAKVSENQDLFPLQKQVHAICEGNGFS
HHHHHHHHHHHHHHEEEEECCEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCE
LETRPYHPHITVARKWVGEKRFVLEHIKEVPEISFQADTITLYESHVKEAPKYKAIAEIK
EECCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEHEEHHHHHCCCCCCEEEEEE
LQK
ECC
>Mature Secondary Structure
MYMEPHYFVAITLPNHIKEVLSNYREEMQEELPFRSWVHKEDYHITLSFLGSATEEQLEG
CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEEECCCCCHHHHHH
IKNGLQTLIETKELSFTLQGFSTFGMEDRPRIFWAKVSENQDLFPLQKQVHAICEGNGFS
HHHHHHHHHHHHHHEEEEECCEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCE
LETRPYHPHITVARKWVGEKRFVLEHIKEVPEISFQADTITLYESHVKEAPKYKAIAEIK
EECCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEHEEHHHHHCCCCCCEEEEEE
LQK
ECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8190087 [H]