| Definition | Bacillus thuringiensis str. Al Hakam chromosome, complete genome. |
|---|---|
| Accession | NC_008600 |
| Length | 5,257,091 |
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The map label for this gene is amyX [H]
Identifier: 118479839
GI number: 118479839
Start: 4498774
End: 4500915
Strand: Reverse
Name: amyX [H]
Synonym: BALH_4277
Alternate gene names: 118479839
Gene position: 4500915-4498774 (Counterclockwise)
Preceding gene: 118479840
Following gene: 118479838
Centisome position: 85.62
GC content: 37.07
Gene sequence:
>2142_bases ATGTTGAAAGTAAAACGTCCATTTGATGCCTATTTAGATGAAATGAATAAAATTACAATTTTGCTCCCACATGCGTATGG AACAAGTCGGACATTTCGTTTGCAAGAAGGAAGTAACGTGAAAGATTTACCGATTGCTCATACAATTGCGCTTCCGGATG CAACGAAGTATGAGTGCTTTATAGAAGAGCCGCTAGATGTGGGGAAGTATTATACAGTACGAGATGAACGGAATGAAGAA ACAGATTTACAAATAGGTGCTGTCATAAGAACAGAGATTTTCGATGAAAAGTATTATTACGAAGGTACAGATTTAGGGGC TGTATATCAAAAAGAAGCAACTACATTTAAAGTATGGGCTCCAACTGCGAGGCTTGCGAAAGTAAGAATTTATAAAAGTG ATAAAGAATATACCGATCACGAAATGCACAGAGAAGAAAATGGGGTATGGGCTCATACATTACAAGGCGATTTAGCCGGG GAAAAGTATACATTTCTTGTTTGTATTAATTTAATATGGAATGAAGCTGTGGATCCTTACGCAAAGTCAGTGACTGTAAA TGGGAAGTACGGTGTTATTATTGATTTGGAAAAAACAAATGTTACAAAGCAAGGGCAATTACCACCATTACAAGCAATGA CAGATGCTATATTGTATGAACTGCATATTCGTGATGCTACTATTCATAAGGGCAGTGGAGTGAGTAAAAAAGGAACATAT AAAGGGCTAATGGAAGAAGGAACAACAGGACAAAATGGGACGTTAACAGGTTTGTCTCATATAAAAGATTTAGGTGTTAC ACATGTTGAATTATTGCCTTTATATTGTTTCGGTGGTGTAGATGAGGCGAATCCTTCTTCTGCATATAATTGGGGTTACA ATCCATTATATTACAACGCACCAACGGGGTTTTATGCTACAAACCCATCTGACCCGTATAACAGGATCGTAGAGTGTAAG CAACTGATTGAAACATTTCATGAACACGGTATTAGGGTGATTATAGATGTTGTATATAATCATGTGTATGAAAGAGAGTT ATCATCATTTGAAAAGCTTGTCCCAGGATATTATTTTCGTCATGGTGAAAATGGTATGCCTTCTAATGGGACGGGAGTCG GAAATGATATAGCTTCTGAACGGAAAATGATGAGGAAATTCATTGTAGAGTCTATTTTATATTGGCTTACGGAATACAAT GTTGATGGATTCCGGTTCGACTTAATGGGGATTTTAGATGTCGATACAATAAATATAATAGAAAAAGAAGTGCGAAACAT AAAGCGAGATGCATTGCTATTAGGAGAAGGGTGGGATCTGCAAACACCACTTCCTCTAGAGGAAAAAGCAACGTTAAATA ATGCAAACAAAATGCCGCATATTGCGCAATTTAATGATCAATTTCGTGATGGGATAAAGGGAAGTACCTTTCATATAAAT AAACGTGGTTTTGCATTTGGTGGGCATGTAGACCGTAATCATTTGCAGTATATAGTATCAGGAAGCCTTTTGAGTATGAA AGAAACAGGTTTGTTTCTAGAGCCTGTGCAAAGCATTAACTATGTAGAATGTCATGACAATATGACGATGTGGGATAAAC TAATGCGCAGTAATGAAGAGTCGGAAGAGATTTTGAAAAAACGTCACGTGCTAGCAACTGCAATGGTGATTCTATCGCAA GGCATCCCTTTCTTACATGCGGGGCAAGAGTTTTATCGTACGAAGCAAGGGAATGAAAATAGTTATAATGCAAATGATGA AATTAATCAATTAGATTGGGATCGAAAAGAGAAAGAAATAGAGACCGTTAACTATATAAAAGGTTTAATTGCGATTCGTA AAGAGCACGGAGCATTCCGATTACAAAACGCAGACTTAATAAAAAAGCACATGACTTTTTTGCAAACATCTCCAGAAGTA CTTGCATATCACTTAGAGCACGTAGAATTGTTTGGACCGTGGAAAGAGATTGTCGTTTTATTTAATAGCAGTTTAGAAGC GAAAACGGTGCAACTTCCGAAAGAAGAAACGTGGCATGTGTTAGTAAACGAAAAGCAAGCGAAAATAGAGCCAATTTCTT CATTTAGAGGAAAGGAACTTAGGCTCTCTCCAATTAGCACGTATATATTGACGATAATGTGA
Upstream 100 bases:
>100_bases ATAAAGAACAATGTGTTACTGTATAGGGCTTCGCTGATAAGAAAAGCCTTATCATTTGCAGCTCGTTTCATTTTAACTTT AAGAATGATGGTGATTTTTT
Downstream 100 bases:
>100_bases CAAATCGCTACTTGACGGTGAGAATGTAATAAATGTAGAATTGACAAAGGTGACGATTTTGATAAGTTGTCATTCTATGG CTGGTTTTGTAAAATAAAAT
Product: pullulanase
Products: NA
Alternate protein names: Alpha-dextrin endo-1,6-alpha-glucosidase; Pullulan 6-glucanohydrolase [H]
Number of amino acids: Translated: 713; Mature: 713
Protein sequence:
>713_residues MLKVKRPFDAYLDEMNKITILLPHAYGTSRTFRLQEGSNVKDLPIAHTIALPDATKYECFIEEPLDVGKYYTVRDERNEE TDLQIGAVIRTEIFDEKYYYEGTDLGAVYQKEATTFKVWAPTARLAKVRIYKSDKEYTDHEMHREENGVWAHTLQGDLAG EKYTFLVCINLIWNEAVDPYAKSVTVNGKYGVIIDLEKTNVTKQGQLPPLQAMTDAILYELHIRDATIHKGSGVSKKGTY KGLMEEGTTGQNGTLTGLSHIKDLGVTHVELLPLYCFGGVDEANPSSAYNWGYNPLYYNAPTGFYATNPSDPYNRIVECK QLIETFHEHGIRVIIDVVYNHVYERELSSFEKLVPGYYFRHGENGMPSNGTGVGNDIASERKMMRKFIVESILYWLTEYN VDGFRFDLMGILDVDTINIIEKEVRNIKRDALLLGEGWDLQTPLPLEEKATLNNANKMPHIAQFNDQFRDGIKGSTFHIN KRGFAFGGHVDRNHLQYIVSGSLLSMKETGLFLEPVQSINYVECHDNMTMWDKLMRSNEESEEILKKRHVLATAMVILSQ GIPFLHAGQEFYRTKQGNENSYNANDEINQLDWDRKEKEIETVNYIKGLIAIRKEHGAFRLQNADLIKKHMTFLQTSPEV LAYHLEHVELFGPWKEIVVLFNSSLEAKTVQLPKEETWHVLVNEKQAKIEPISSFRGKELRLSPISTYILTIM
Sequences:
>Translated_713_residues MLKVKRPFDAYLDEMNKITILLPHAYGTSRTFRLQEGSNVKDLPIAHTIALPDATKYECFIEEPLDVGKYYTVRDERNEE TDLQIGAVIRTEIFDEKYYYEGTDLGAVYQKEATTFKVWAPTARLAKVRIYKSDKEYTDHEMHREENGVWAHTLQGDLAG EKYTFLVCINLIWNEAVDPYAKSVTVNGKYGVIIDLEKTNVTKQGQLPPLQAMTDAILYELHIRDATIHKGSGVSKKGTY KGLMEEGTTGQNGTLTGLSHIKDLGVTHVELLPLYCFGGVDEANPSSAYNWGYNPLYYNAPTGFYATNPSDPYNRIVECK QLIETFHEHGIRVIIDVVYNHVYERELSSFEKLVPGYYFRHGENGMPSNGTGVGNDIASERKMMRKFIVESILYWLTEYN VDGFRFDLMGILDVDTINIIEKEVRNIKRDALLLGEGWDLQTPLPLEEKATLNNANKMPHIAQFNDQFRDGIKGSTFHIN KRGFAFGGHVDRNHLQYIVSGSLLSMKETGLFLEPVQSINYVECHDNMTMWDKLMRSNEESEEILKKRHVLATAMVILSQ GIPFLHAGQEFYRTKQGNENSYNANDEINQLDWDRKEKEIETVNYIKGLIAIRKEHGAFRLQNADLIKKHMTFLQTSPEV LAYHLEHVELFGPWKEIVVLFNSSLEAKTVQLPKEETWHVLVNEKQAKIEPISSFRGKELRLSPISTYILTIM >Mature_713_residues MLKVKRPFDAYLDEMNKITILLPHAYGTSRTFRLQEGSNVKDLPIAHTIALPDATKYECFIEEPLDVGKYYTVRDERNEE TDLQIGAVIRTEIFDEKYYYEGTDLGAVYQKEATTFKVWAPTARLAKVRIYKSDKEYTDHEMHREENGVWAHTLQGDLAG EKYTFLVCINLIWNEAVDPYAKSVTVNGKYGVIIDLEKTNVTKQGQLPPLQAMTDAILYELHIRDATIHKGSGVSKKGTY KGLMEEGTTGQNGTLTGLSHIKDLGVTHVELLPLYCFGGVDEANPSSAYNWGYNPLYYNAPTGFYATNPSDPYNRIVECK QLIETFHEHGIRVIIDVVYNHVYERELSSFEKLVPGYYFRHGENGMPSNGTGVGNDIASERKMMRKFIVESILYWLTEYN VDGFRFDLMGILDVDTINIIEKEVRNIKRDALLLGEGWDLQTPLPLEEKATLNNANKMPHIAQFNDQFRDGIKGSTFHIN KRGFAFGGHVDRNHLQYIVSGSLLSMKETGLFLEPVQSINYVECHDNMTMWDKLMRSNEESEEILKKRHVLATAMVILSQ GIPFLHAGQEFYRTKQGNENSYNANDEINQLDWDRKEKEIETVNYIKGLIAIRKEHGAFRLQNADLIKKHMTFLQTSPEV LAYHLEHVELFGPWKEIVVLFNSSLEAKTVQLPKEETWHVLVNEKQAKIEPISSFRGKELRLSPISTYILTIM
Specific function: Hydrolyzes The Alpha-1,6-Glucosidic Linkages In Glycogen Which Has First Been Partially Depolymerized By Phosphorylase. Shows Only Very Little Activity With Native Glycogen. [C]
COG id: COG1523
COG function: function code G; Type II secretory pathway, pullulanase PulA and related glycosidases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 13 family [H]
Homologues:
Organism=Escherichia coli, GI2367229, Length=669, Percent_Identity=22.8699551569507, Blast_Score=139, Evalue=6e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006047 - InterPro: IPR004193 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR013783 - InterPro: IPR011840 [H]
Pfam domain/function: PF00128 Alpha-amylase; PF02922 CBM_48 [H]
EC number: =3.2.1.41 [H]
Molecular weight: Translated: 81658; Mature: 81658
Theoretical pI: Translated: 6.00; Mature: 6.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKVKRPFDAYLDEMNKITILLPHAYGTSRTFRLQEGSNVKDLPIAHTIALPDATKYECF CCCCCCCHHHHHHCCCCEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCEEEE IEEPLDVGKYYTVRDERNEETDLQIGAVIRTEIFDEKYYYEGTDLGAVYQKEATTFKVWA ECCCCCCCCEEEECCCCCCCCCEEEEEEEEHHHHCCCEEECCCCCCCEEECCCCEEEEEC PTARLAKVRIYKSDKEYTDHEMHREENGVWAHTLQGDLAGEKYTFLVCINLIWNEAVDPY CCCEEEEEEEEECCCCCCHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEHHHHHCCCCH AKSVTVNGKYGVIIDLEKTNVTKQGQLPPLQAMTDAILYELHIRDATIHKGSGVSKKGTY HHEEEECCCEEEEEEEECCCCCCCCCCCCHHHHHHHHEEEEEECCEEEECCCCCCCCCCH KGLMEEGTTGQNGTLTGLSHIKDLGVTHVELLPLYCFGGVDEANPSSAYNWGYNPLYYNA HHHHHCCCCCCCCCCHHHHHHHHCCCCCEEEEEEHEECCCCCCCCCCCCCCCCCCEEECC PTGFYATNPSDPYNRIVECKQLIETFHEHGIRVIIDVVYNHVYERELSSFEKLVPGYYFR CCCCEECCCCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCCCEEE HGENGMPSNGTGVGNDIASERKMMRKFIVESILYWLTEYNVDGFRFDLMGILDVDTINII CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCHHHHH EKEVRNIKRDALLLGEGWDLQTPLPLEEKATLNNANKMPHIAQFNDQFRDGIKGSTFHIN HHHHHHHHHCEEEEECCCCCCCCCCCCHHHCCCCCCCCCCHHHHCHHHHCCCCCCEEEEE KRGFAFGGHVDRNHLQYIVSGSLLSMKETGLFLEPVQSINYVECHDNMTMWDKLMRSNEE CCCEEECCCCCCCHHEEEECCCEEEHHHCCCEEEHHCCCCEEEECCCHHHHHHHHHCCCH SEEILKKRHVLATAMVILSQGIPFLHAGQEFYRTKQGNENSYNANDEINQLDWDRKEKEI HHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHH ETVNYIKGLIAIRKEHGAFRLQNADLIKKHMTFLQTSPEVLAYHLEHVELFGPWKEIVVL HHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHEE FNSSLEAKTVQLPKEETWHVLVNEKQAKIEPISSFRGKELRLSPISTYILTIM ECCCCCCEEEECCCCCCEEEEECCCCCCCCCHHHCCCCEEEECHHCEEEEEEC >Mature Secondary Structure MLKVKRPFDAYLDEMNKITILLPHAYGTSRTFRLQEGSNVKDLPIAHTIALPDATKYECF CCCCCCCHHHHHHCCCCEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCEEEE IEEPLDVGKYYTVRDERNEETDLQIGAVIRTEIFDEKYYYEGTDLGAVYQKEATTFKVWA ECCCCCCCCEEEECCCCCCCCCEEEEEEEEHHHHCCCEEECCCCCCCEEECCCCEEEEEC PTARLAKVRIYKSDKEYTDHEMHREENGVWAHTLQGDLAGEKYTFLVCINLIWNEAVDPY CCCEEEEEEEEECCCCCCHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEHHHHHCCCCH AKSVTVNGKYGVIIDLEKTNVTKQGQLPPLQAMTDAILYELHIRDATIHKGSGVSKKGTY HHEEEECCCEEEEEEEECCCCCCCCCCCCHHHHHHHHEEEEEECCEEEECCCCCCCCCCH KGLMEEGTTGQNGTLTGLSHIKDLGVTHVELLPLYCFGGVDEANPSSAYNWGYNPLYYNA HHHHHCCCCCCCCCCHHHHHHHHCCCCCEEEEEEHEECCCCCCCCCCCCCCCCCCEEECC PTGFYATNPSDPYNRIVECKQLIETFHEHGIRVIIDVVYNHVYERELSSFEKLVPGYYFR CCCCEECCCCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCCCEEE HGENGMPSNGTGVGNDIASERKMMRKFIVESILYWLTEYNVDGFRFDLMGILDVDTINII CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCHHHHH EKEVRNIKRDALLLGEGWDLQTPLPLEEKATLNNANKMPHIAQFNDQFRDGIKGSTFHIN HHHHHHHHHCEEEEECCCCCCCCCCCCHHHCCCCCCCCCCHHHHCHHHHCCCCCCEEEEE KRGFAFGGHVDRNHLQYIVSGSLLSMKETGLFLEPVQSINYVECHDNMTMWDKLMRSNEE CCCEEECCCCCCCHHEEEECCCEEEHHHCCCEEEHHCCCCEEEECCCHHHHHHHHHCCCH SEEILKKRHVLATAMVILSQGIPFLHAGQEFYRTKQGNENSYNANDEINQLDWDRKEKEI HHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHH ETVNYIKGLIAIRKEHGAFRLQNADLIKKHMTFLQTSPEVLAYHLEHVELFGPWKEIVVL HHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHEE FNSSLEAKTVQLPKEETWHVLVNEKQAKIEPISSFRGKELRLSPISTYILTIM ECCCCCCEEEECCCCCCEEEEECCCCCCCCCHHHCCCCEEEECHHCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]