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The map label for this gene is ydcN [H]

Identifier: 118479657

GI number: 118479657

Start: 4307004

End: 4307576

Strand: Reverse

Name: ydcN [H]

Synonym: BALH_4084

Alternate gene names: 118479657

Gene position: 4307576-4307004 (Counterclockwise)

Preceding gene: 118479660

Following gene: 118479656

Centisome position: 81.94

GC content: 35.43

Gene sequence:

>573_bases
ATGAAAGAATATGAAGATATGCAAACGAAAGAAGTCATTCAGCAAGTAGGTCAGCTGTTAAGACAAATTCGAAATGAACA
AAAATTAAGTTTAGAAGAATTAGCCCAAAAAACAGGAGTTAGTAAATTAACATTAGGAAAAATTGAAAGAGGCGAAACGA
ATCCGACATTAGCTGTCATTTGGAAAATAACAAAAGGGTTATCGATTCCTTTATCGAGATTGATGGTTGTTGGAGAACCT
GTAGCTGTGGCGCGCTGCGGAGAAGGATTTGCAGTAGATGCAGGACAAGCATGGCACTTAGAAACGATGTTCCGTTATAC
GAAAGAAACGGGAATGGAAATGCACCGTGCTTGTTTAAGATCGAATAGTATATATGAACCAGAAGCTCATCATGAAGGTG
CTATTGAGCTTGTAACGGTAATGAAAGGGAAAGTATCGATTCAAGTTGAGAATGATGTATACATATTAAATGAGTATGAC
TCTATTCAATTTGAAGCAAATAAGAAACATAGTTATAAAAATGAAGAAGATGAAGTGGCAGTATTACATTTAACGATGAA
ATATTCTTCATGA

Upstream 100 bases:

>100_bases
GAAGTATAGCACTCCTTTCGAAATTTAATGATTATGTATAGTATAATATACTTTAAGTTTAAAAAAGTAAACTATTTTAT
ATTTTAAGGTGGTTTTATAG

Downstream 100 bases:

>100_bases
AAAAATCCCCTATAGAAAAATCTATAGGGGATTTTTTGTGCGCTATGCTCAAATATATGAAAGAATGTTATTAGTAAGAG
CGTGGCATAAGTAATAAACA

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MKEYEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSRLMVVGEP
VAVARCGEGFAVDAGQAWHLETMFRYTKETGMEMHRACLRSNSIYEPEAHHEGAIELVTVMKGKVSIQVENDVYILNEYD
SIQFEANKKHSYKNEEDEVAVLHLTMKYSS

Sequences:

>Translated_190_residues
MKEYEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSRLMVVGEP
VAVARCGEGFAVDAGQAWHLETMFRYTKETGMEMHRACLRSNSIYEPEAHHEGAIELVTVMKGKVSIQVENDVYILNEYD
SIQFEANKKHSYKNEEDEVAVLHLTMKYSS
>Mature_190_residues
MKEYEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSRLMVVGEP
VAVARCGEGFAVDAGQAWHLETMFRYTKETGMEMHRACLRSNSIYEPEAHHEGAIELVTVMKGKVSIQVENDVYILNEYD
SIQFEANKKHSYKNEEDEVAVLHLTMKYSS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=170, Percent_Identity=31.7647058823529, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 21601; Mature: 21601

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEYEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVI
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCEEEEE
WKITKGLSIPLSRLMVVGEPVAVARCGEGFAVDAGQAWHLETMFRYTKETGMEMHRACLR
EEECCCCCCCHHHHHHHCCCCEEEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
SNSIYEPEAHHEGAIELVTVMKGKVSIQVENDVYILNEYDSIQFEANKKHSYKNEEDEVA
CCCCCCCCCCCCCCEEEEEEECCEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCEE
VLHLTMKYSS
EEEEEEEECC
>Mature Secondary Structure
MKEYEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVI
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCEEEEE
WKITKGLSIPLSRLMVVGEPVAVARCGEGFAVDAGQAWHLETMFRYTKETGMEMHRACLR
EEECCCCCCCHHHHHHHCCCCEEEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
SNSIYEPEAHHEGAIELVTVMKGKVSIQVENDVYILNEYDSIQFEANKKHSYKNEEDEVA
CCCCCCCCCCCCCCEEEEEEECCEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCEE
VLHLTMKYSS
EEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]