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The map label for this gene is yahJ [H]

Identifier: 118479656

GI number: 118479656

Start: 4305326

End: 4306567

Strand: Reverse

Name: yahJ [H]

Synonym: BALH_4083

Alternate gene names: 118479656

Gene position: 4306567-4305326 (Counterclockwise)

Preceding gene: 118479657

Following gene: 118479655

Centisome position: 81.92

GC content: 39.29

Gene sequence:

>1242_bases
ATGACAATATATTGGTTGACTAATGTAATGCTTGAATCAGGGTATACATATGAAGAGGGGAGAATTTCCCAAACAGAAAC
AGAGTTATGTAGTTTACTCATTGAAGATGGACGAATTAAAAAAATTATGACAGGGGCTGTTCAAGAGGAAAGGATATCAA
TTTTTGATGCCAATCGTTTATTAATTTTGCCTGCTTTCGAAGAGATGCATATTCACATTGATAAAACTTATTATGGTGGT
CCTTGGAAAGCTTCTATGCCAGCAGAAAGTATTTTTACACGTTTTAATGAAGAAGAGGAAATTTTACCGAAGCAATTAGC
GACTGCTCAAGATAGGGCGGAAAATATGCTAGCGTTATTGCTTCAAAATGGTGCAACGAATATAAGAACGCATTGTAATG
TTGATCCAATTATTGGACTTGGTAATTTGGAGGCGACGTTAGCAGCGTTGGAAACATATAAAAATCAGGTTTCTAGTAGA
ATCGTTGCTTTTCCGCAACATGGATTATTGCGCAGCGATTCCGTGCAACTCGTGAAAGATGCGATGCGTATGGGTGCACA
TCTAGTCGGTGGTGTGGATCCGGCTACAGTGGATAATGATATTGAAAAATCATTACATACCATTATGGATATCGCAGTAG
AATTTAATGCGGACGTTGATATTCATCTGCATGATGCGAATAATCTTGGAACGTTTACGATGAAGAGGTTGGCAAGTTTA
ACAGAGGAGGCGGGTTGGCAAGGTCGTGTAACAATTAGTCATGCGCTTGGACTTGGTGGTGTTACAGATAAAGAAGCTGA
AGAAGTGGCGGAAAGACTGGCTGCTTTAAATATTGATATTACTTCAACAGTACCAATTGGGAAACAAGTAATCCCAATTC
CGTTATTAGATAAAAAAGGTGTGAAAGTTTCATTAGGAAATGATAGTATTACAGATCATTGGTCACCGTTTGGGACAGGT
GATATGCTGCAAAAGGCAACTCGATTAGCCGAACGTTTTGGATGGAGTGACGAAAGGTCCTTAGGAAAAGCACTTCGCTT
TATTACGGGAGGAAAAGAAACGTTAAACAGTGAAGGGAAGCGAGCTTGGCCGAATGTAGGAGATGAAGCAAGTTTTGTTT
TGACGAATGCAACATGCGTTGCTGAAGCAGTAGCGCGTCAAACAGAGAAGCATTTAGTCGTGCATAAAGGAAATATTGTT
GTTGGCAGTTTAAATGAGGTGGAATTAAATAATCTTGTGTAA

Upstream 100 bases:

>100_bases
TACATTTTTTTAGGGAACAGCCATATTAATTGTCTTAATTTTCAGTGGATATTAAAATTATATCATGAGGTGATTTTTAA
TAAAGGGTGGGGGAATAGAG

Downstream 100 bases:

>100_bases
AAGAATCGTTTAAATGTTTTGAGGAGGGTTCTAATGATGAGTATAGAACTCTTCTTTTTTATTCTTACAATATACTTTTT
ATAGGAAGCTAGAAGGGATG

Product: putative deaminase

Products: uracil; NH3

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 412

Protein sequence:

>413_residues
MTIYWLTNVMLESGYTYEEGRISQTETELCSLLIEDGRIKKIMTGAVQEERISIFDANRLLILPAFEEMHIHIDKTYYGG
PWKASMPAESIFTRFNEEEEILPKQLATAQDRAENMLALLLQNGATNIRTHCNVDPIIGLGNLEATLAALETYKNQVSSR
IVAFPQHGLLRSDSVQLVKDAMRMGAHLVGGVDPATVDNDIEKSLHTIMDIAVEFNADVDIHLHDANNLGTFTMKRLASL
TEEAGWQGRVTISHALGLGGVTDKEAEEVAERLAALNIDITSTVPIGKQVIPIPLLDKKGVKVSLGNDSITDHWSPFGTG
DMLQKATRLAERFGWSDERSLGKALRFITGGKETLNSEGKRAWPNVGDEASFVLTNATCVAEAVARQTEKHLVVHKGNIV
VGSLNEVELNNLV

Sequences:

>Translated_413_residues
MTIYWLTNVMLESGYTYEEGRISQTETELCSLLIEDGRIKKIMTGAVQEERISIFDANRLLILPAFEEMHIHIDKTYYGG
PWKASMPAESIFTRFNEEEEILPKQLATAQDRAENMLALLLQNGATNIRTHCNVDPIIGLGNLEATLAALETYKNQVSSR
IVAFPQHGLLRSDSVQLVKDAMRMGAHLVGGVDPATVDNDIEKSLHTIMDIAVEFNADVDIHLHDANNLGTFTMKRLASL
TEEAGWQGRVTISHALGLGGVTDKEAEEVAERLAALNIDITSTVPIGKQVIPIPLLDKKGVKVSLGNDSITDHWSPFGTG
DMLQKATRLAERFGWSDERSLGKALRFITGGKETLNSEGKRAWPNVGDEASFVLTNATCVAEAVARQTEKHLVVHKGNIV
VGSLNEVELNNLV
>Mature_412_residues
TIYWLTNVMLESGYTYEEGRISQTETELCSLLIEDGRIKKIMTGAVQEERISIFDANRLLILPAFEEMHIHIDKTYYGGP
WKASMPAESIFTRFNEEEEILPKQLATAQDRAENMLALLLQNGATNIRTHCNVDPIIGLGNLEATLAALETYKNQVSSRI
VAFPQHGLLRSDSVQLVKDAMRMGAHLVGGVDPATVDNDIEKSLHTIMDIAVEFNADVDIHLHDANNLGTFTMKRLASLT
EEAGWQGRVTISHALGLGGVTDKEAEEVAERLAALNIDITSTVPIGKQVIPIPLLDKKGVKVSLGNDSITDHWSPFGTGD
MLQKATRLAERFGWSDERSLGKALRFITGGKETLNSEGKRAWPNVGDEASFVLTNATCVAEAVARQTEKHLVVHKGNIVV
GSLNEVELNNLV

Specific function: Unknown

COG id: COG0402

COG function: function code FR; Cytosine deaminase and related metal-dependent hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786517, Length=405, Percent_Identity=42.2222222222222, Blast_Score=333, Evalue=2e-92,
Organism=Escherichia coli, GI1786531, Length=400, Percent_Identity=24.25, Blast_Score=102, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: 3.5.4.1

Molecular weight: Translated: 45396; Mature: 45265

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIYWLTNVMLESGYTYEEGRISQTETELCSLLIEDGRIKKIMTGAVQEERISIFDANRL
CEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHCCHHHHHEEEEECCCE
LILPAFEEMHIHIDKTYYGGPWKASMPAESIFTRFNEEEEILPKQLATAQDRAENMLALL
EEEECCCEEEEEEECEEECCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LQNGATNIRTHCNVDPIIGLGNLEATLAALETYKNQVSSRIVAFPQHGLLRSDSVQLVKD
HHCCCCCCEEECCCCCEEECCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHH
AMRMGAHLVGGVDPATVDNDIEKSLHTIMDIAVEFNADVDIHLHDANNLGTFTMKRLASL
HHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHHEEECCCEEEEEECCCCCCHHHHHHHHHH
TEEAGWQGRVTISHALGLGGVTDKEAEEVAERLAALNIDITSTVPIGKQVIPIPLLDKKG
HHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCEECCCCCCCCC
VKVSLGNDSITDHWSPFGTGDMLQKATRLAERFGWSDERSLGKALRFITGGKETLNSEGK
CEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHCCCCC
RAWPNVGDEASFVLTNATCVAEAVARQTEKHLVVHKGNIVVGSLNEVELNNLV
CCCCCCCCCCEEEEECHHHHHHHHHHHHHHEEEEEECCEEEECCCCCCCCCCC
>Mature Secondary Structure 
TIYWLTNVMLESGYTYEEGRISQTETELCSLLIEDGRIKKIMTGAVQEERISIFDANRL
EEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHCCHHHHHEEEEECCCE
LILPAFEEMHIHIDKTYYGGPWKASMPAESIFTRFNEEEEILPKQLATAQDRAENMLALL
EEEECCCEEEEEEECEEECCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LQNGATNIRTHCNVDPIIGLGNLEATLAALETYKNQVSSRIVAFPQHGLLRSDSVQLVKD
HHCCCCCCEEECCCCCEEECCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHH
AMRMGAHLVGGVDPATVDNDIEKSLHTIMDIAVEFNADVDIHLHDANNLGTFTMKRLASL
HHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHHEEECCCEEEEEECCCCCCHHHHHHHHHH
TEEAGWQGRVTISHALGLGGVTDKEAEEVAERLAALNIDITSTVPIGKQVIPIPLLDKKG
HHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCEECCCCCCCCC
VKVSLGNDSITDHWSPFGTGDMLQKATRLAERFGWSDERSLGKALRFITGGKETLNSEGK
CEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHCCCCC
RAWPNVGDEASFVLTNATCVAEAVARQTEKHLVVHKGNIVVGSLNEVELNNLV
CCCCCCCCCCEEEEECHHHHHHHHHHHHHHEEEEEECCEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: cytosine; H2O

Specific reaction: cytosine + H2O = uracil + NH3

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]