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The map label for this gene is cspB [H]

Identifier: 118478788

GI number: 118478788

Start: 3366438

End: 3366638

Strand: Reverse

Name: cspB [H]

Synonym: BALH_3180

Alternate gene names: 118478788

Gene position: 3366638-3366438 (Counterclockwise)

Preceding gene: 118478789

Following gene: 118478787

Centisome position: 64.04

GC content: 38.81

Gene sequence:

>201_bases
ATGCAAAACGGTAAAGTAAAATGGTTTAACTCAGAAAAAGGTTTCGGATTCATCGAAGTTGAAGGCGGAGAAGACGTATT
CGTTCATTTCTCAGCTATCCAAGGCGAAGGTTTCAAAACTTTAGAAGAAGGTCAAGAAGTTACTTTCGAAGTAGAACAAG
GTAACCGTGGACCTCAAGCTACAAACGTTAACAAGAAGTAA

Upstream 100 bases:

>100_bases
ATCTCCTCAGAGTTGCAGTTTTTTTAATGTCTGACTTATTTTTGTAAAGTGGTTGAAAATGAATATGTACATATAGGTAC
ATTGTAGGAGGATTTTTTAC

Downstream 100 bases:

>100_bases
TTGTGGAAAAAAGAAGGGCTTGCCCTTCTTTTTTTTTGCATTTTTATTGAATAACCTCCTATGTACATAGCATAATGAGA
TTGAATTTTCATTTTTTAGA

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 66; Mature: 66

Protein sequence:

>66_residues
MQNGKVKWFNSEKGFGFIEVEGGEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGNRGPQATNVNKK

Sequences:

>Translated_66_residues
MQNGKVKWFNSEKGFGFIEVEGGEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGNRGPQATNVNKK
>Mature_66_residues
MQNGKVKWFNSEKGFGFIEVEGGEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGNRGPQATNVNKK

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1787839, Length=63, Percent_Identity=61.9047619047619, Blast_Score=85, Evalue=1e-18,
Organism=Escherichia coli, GI1788126, Length=62, Percent_Identity=66.1290322580645, Blast_Score=84, Evalue=2e-18,
Organism=Escherichia coli, GI1789979, Length=64, Percent_Identity=59.375, Blast_Score=82, Evalue=5e-18,
Organism=Escherichia coli, GI1786841, Length=61, Percent_Identity=67.2131147540984, Blast_Score=81, Evalue=2e-17,
Organism=Escherichia coli, GI2367114, Length=61, Percent_Identity=62.2950819672131, Blast_Score=79, Evalue=5e-17,
Organism=Escherichia coli, GI1787834, Length=63, Percent_Identity=61.9047619047619, Blast_Score=76, Evalue=3e-16,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=54.6875, Blast_Score=74, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24658520, Length=64, Percent_Identity=50, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7366; Mature: 7366

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNGKVKWFNSEKGFGFIEVEGGEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGNRGPQA
CCCCCEEEEECCCCCEEEEEECCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCC
TNVNKK
CCCCCC
>Mature Secondary Structure
MQNGKVKWFNSEKGFGFIEVEGGEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGNRGPQA
CCCCCEEEEECCCCCEEEEEECCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCC
TNVNKK
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8631682 [H]