Click here to switch to the map view.

The map label for this gene is rutD [H]

Identifier: 118478064

GI number: 118478064

Start: 2589129

End: 2589989

Strand: Direct

Name: rutD [H]

Synonym: BALH_2419

Alternate gene names: 118478064

Gene position: 2589129-2589989 (Clockwise)

Preceding gene: 118478063

Following gene: 118478066

Centisome position: 49.25

GC content: 32.4

Gene sequence:

>861_bases
ATGAAAATTTCAGATAGGAGATTCGATATGTGGACAACAAATATTATCAAAACTCCAAGAGGAAAGTTTGAATATTTTCT
AAAGGGAGAAGGACCTCCACTTTGCGTTACTCATTTGTATAGTGAGTATAATGATAATGGAAATACTTTTGCAAACCCAT
TTACTGACCATTATAGCGTATATTTAGTTAACTTAAAGGGATGTGGCAATTCAGATTCAGCAAAAAATGACTCTGAATAT
AGTATGACCGAAACGATTAAAGATTTAGAAGCGATTCGAGAAGCTTTATATATTAATAAATGGGGGTTTGCAGGTCATTC
GACAGGAGGGATGTTAGCTCTTGTATATGCGACTGAAGCACAAGAAAGTTTAACGAAAATAATTGTTGGTGGCGCAGCGG
CGAGTAAGGAATATGCATCTCATAAAGATAGTATATACTGTAGTGAAAATAAAAATTTTAATAAAATCCTATTAATTATG
AATGCATTAAATGATGATAGTACATTACAAGAAGAAAGAAAAGCATTAAGTAGAGAGTGGGCACTTATGTCTTTTTATTC
TGAAGAAAAGCTTGAAGAAGCGTTAAAACTGCCGAATAGCGGAAAGACAGTTGGCAATCGGCTAAATTATTTTAGACAAG
TTGAATATAAAGATTATGATGTTCGTCAGAAACTTAAATTCGTAAAAATCCCAAGTTTTATATACTGTGGTAAGCATGAT
GCACAATGTCCCTACATATTTTCTCGTGAAATAGCAAATTTAATCCCGAACGCAACATTAACTAAATTTGAAGAAAGTAA
TCATAATCCATTCGTTGAAGAAATAGACAAGTTTAATCAGTTTGTCAACGATACATTATAA

Upstream 100 bases:

>100_bases
TAAATTAATAAATTATAGGAATCAGAAATTGGTTAAGCAGGATAGGTTACTTACTTCTTTATATAATACTATTCGCTTAT
AAATAACAAACTAAGAGAAA

Downstream 100 bases:

>100_bases
TCAATAAGTAAAAAGCGAATCTTTTATATAAGACAGATTCGCTTTTTATTATAATTAGACTTTTTGCCACCAAGCATACC
TAGGATAGTCTGTAGATTTT

Product: alpha/beta fold family hydrolase

Products: NA

Alternate protein names: Aminohydrolase [H]

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MKISDRRFDMWTTNIIKTPRGKFEYFLKGEGPPLCVTHLYSEYNDNGNTFANPFTDHYSVYLVNLKGCGNSDSAKNDSEY
SMTETIKDLEAIREALYINKWGFAGHSTGGMLALVYATEAQESLTKIIVGGAAASKEYASHKDSIYCSENKNFNKILLIM
NALNDDSTLQEERKALSREWALMSFYSEEKLEEALKLPNSGKTVGNRLNYFRQVEYKDYDVRQKLKFVKIPSFIYCGKHD
AQCPYIFSREIANLIPNATLTKFEESNHNPFVEEIDKFNQFVNDTL

Sequences:

>Translated_286_residues
MKISDRRFDMWTTNIIKTPRGKFEYFLKGEGPPLCVTHLYSEYNDNGNTFANPFTDHYSVYLVNLKGCGNSDSAKNDSEY
SMTETIKDLEAIREALYINKWGFAGHSTGGMLALVYATEAQESLTKIIVGGAAASKEYASHKDSIYCSENKNFNKILLIM
NALNDDSTLQEERKALSREWALMSFYSEEKLEEALKLPNSGKTVGNRLNYFRQVEYKDYDVRQKLKFVKIPSFIYCGKHD
AQCPYIFSREIANLIPNATLTKFEESNHNPFVEEIDKFNQFVNDTL
>Mature_286_residues
MKISDRRFDMWTTNIIKTPRGKFEYFLKGEGPPLCVTHLYSEYNDNGNTFANPFTDHYSVYLVNLKGCGNSDSAKNDSEY
SMTETIKDLEAIREALYINKWGFAGHSTGGMLALVYATEAQESLTKIIVGGAAASKEYASHKDSIYCSENKNFNKILLIM
NALNDDSTLQEERKALSREWALMSFYSEEKLEEALKLPNSGKTVGNRLNYFRQVEYKDYDVRQKLKFVKIPSFIYCGKHD
AQCPYIFSREIANLIPNATLTKFEESNHNPFVEEIDKFNQFVNDTL

Specific function: May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation [H]

COG id: COG0596

COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily. Hydrolase RutD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR019913 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: NA

Molecular weight: Translated: 32781; Mature: 32781

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKISDRRFDMWTTNIIKTPRGKFEYFLKGEGPPLCVTHLYSEYNDNGNTFANPFTDHYSV
CCCCCCCCCCEEHHHEECCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEECCCCCCCEEE
YLVNLKGCGNSDSAKNDSEYSMTETIKDLEAIREALYINKWGFAGHSTGGMLALVYATEA
EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCH
QESLTKIIVGGAAASKEYASHKDSIYCSENKNFNKILLIMNALNDDSTLQEERKALSREW
HHHHHHHHCCCCHHHHHHHCCCCCEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
ALMSFYSEEKLEEALKLPNSGKTVGNRLNYFRQVEYKDYDVRQKLKFVKIPSFIYCGKHD
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHEEECCCEEEECCCC
AQCPYIFSREIANLIPNATLTKFEESNHNPFVEEIDKFNQFVNDTL
CCCCHHHHHHHHHHCCCCCEEHHHCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKISDRRFDMWTTNIIKTPRGKFEYFLKGEGPPLCVTHLYSEYNDNGNTFANPFTDHYSV
CCCCCCCCCCEEHHHEECCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEECCCCCCCEEE
YLVNLKGCGNSDSAKNDSEYSMTETIKDLEAIREALYINKWGFAGHSTGGMLALVYATEA
EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCH
QESLTKIIVGGAAASKEYASHKDSIYCSENKNFNKILLIMNALNDDSTLQEERKALSREW
HHHHHHHHCCCCHHHHHHHCCCCCEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
ALMSFYSEEKLEEALKLPNSGKTVGNRLNYFRQVEYKDYDVRQKLKFVKIPSFIYCGKHD
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHEEECCCEEEECCCC
AQCPYIFSREIANLIPNATLTKFEESNHNPFVEEIDKFNQFVNDTL
CCCCHHHHHHHHHHCCCCCEEHHHCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA