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The map label for this gene is yodJ [H]

Identifier: 118477926

GI number: 118477926

Start: 2435642

End: 2436373

Strand: Direct

Name: yodJ [H]

Synonym: BALH_2271

Alternate gene names: 118477926

Gene position: 2435642-2436373 (Clockwise)

Preceding gene: 118477924

Following gene: 118477928

Centisome position: 46.33

GC content: 34.7

Gene sequence:

>732_bases
ATGAGAATTAAATTAGTAGGGATTTTTACTTGTATGATTGTAATAGTAGGTATCTTTATCGTTTACACCAATCAATCTAT
TGGTAAAGAACCAATAAAGACAAACTATGAAACTCGTGAAAACTCCATAAATAGAGAGCGAAATGGTACTTCAAATAACA
TAGCGAGTTCTTTTGCTAGTGTACAAGCTGTAGTTAATAAAGAATATGGATTGCCTGAAGACTATAAACCGGAAGATTTA
GTTGTACCAAATGTACCATTCTCATTCAGTGGAACGCTAGAAAAGAGTTACCTTCGTAAAGAGGCAGCAGAAGCACTAGA
AAGGTTATTTAATTTAGCAAAGAAAGAAGGAATTCAGTTGAATGCTGTTTCTGGGTTTCGCTCCTATGATTATCAAAAAA
AACTGTATGCAAACAACGTGAAAAGAAAAGGACAAGAGCATACGGATCGCTTCTCGGCAAAACCTGGACATAGTGAACAT
CAAACAGGATTAACGATGGATGTTTCTTCTAAAAGTGCAAATAATGAGCTAGAGTTAACCTTTGCGAATACGAAAGAAGG
AAAATGGCTGAAAGAAAATGCGCATCGTGCAGGTTTTATTATTCGTTATCCAAAAGGTAAAGAGAGTATTACTGGATACG
CATATGAACCGTGGCATATTCGCTATGTAGGAGATATTGCTGAAAGTATATATAAGAAAAAATTGACTTTAGAAGAATAT
ATGAATCTGTGA

Upstream 100 bases:

>100_bases
TTCTGTTAAGAACAAAAGTTCACTTCAAATTAATATGAATTTGATATGGTTGTAGTATTATAAACGAGAAATATTAAGAG
TGGCAGGAAGGAAATGAATA

Downstream 100 bases:

>100_bases
AAATAGAATTAAAGAATTAAATTGGCTAGCGATAGCAGTAAGATTGTAAAAGATAGGGGTATGAAATAAGATATTTCTTA
ATGTTTTTAAAGGGTATGCT

Product: M15B family D-Ala-D-Ala carboxypeptidase VanY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MRIKLVGIFTCMIVIVGIFIVYTNQSIGKEPIKTNYETRENSINRERNGTSNNIASSFASVQAVVNKEYGLPEDYKPEDL
VVPNVPFSFSGTLEKSYLRKEAAEALERLFNLAKKEGIQLNAVSGFRSYDYQKKLYANNVKRKGQEHTDRFSAKPGHSEH
QTGLTMDVSSKSANNELELTFANTKEGKWLKENAHRAGFIIRYPKGKESITGYAYEPWHIRYVGDIAESIYKKKLTLEEY
MNL

Sequences:

>Translated_243_residues
MRIKLVGIFTCMIVIVGIFIVYTNQSIGKEPIKTNYETRENSINRERNGTSNNIASSFASVQAVVNKEYGLPEDYKPEDL
VVPNVPFSFSGTLEKSYLRKEAAEALERLFNLAKKEGIQLNAVSGFRSYDYQKKLYANNVKRKGQEHTDRFSAKPGHSEH
QTGLTMDVSSKSANNELELTFANTKEGKWLKENAHRAGFIIRYPKGKESITGYAYEPWHIRYVGDIAESIYKKKLTLEEY
MNL
>Mature_243_residues
MRIKLVGIFTCMIVIVGIFIVYTNQSIGKEPIKTNYETRENSINRERNGTSNNIASSFASVQAVVNKEYGLPEDYKPEDL
VVPNVPFSFSGTLEKSYLRKEAAEALERLFNLAKKEGIQLNAVSGFRSYDYQKKLYANNVKRKGQEHTDRFSAKPGHSEH
QTGLTMDVSSKSANNELELTFANTKEGKWLKENAHRAGFIIRYPKGKESITGYAYEPWHIRYVGDIAESIYKKKLTLEEY
MNL

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 27710; Mature: 27710

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIKLVGIFTCMIVIVGIFIVYTNQSIGKEPIKTNYETRENSINRERNGTSNNIASSFAS
CEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHH
VQAVVNKEYGLPEDYKPEDLVVPNVPFSFSGTLEKSYLRKEAAEALERLFNLAKKEGIQL
HHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEE
NAVSGFRSYDYQKKLYANNVKRKGQEHTDRFSAKPGHSEHQTGLTMDVSSKSANNELELT
EEECCCHHCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCEEEEE
FANTKEGKWLKENAHRAGFIIRYPKGKESITGYAYEPWHIRYVGDIAESIYKKKLTLEEY
EECCCCCCHHHHCCCCCCEEEECCCCCCCCCCEEECCEEEEEHHHHHHHHHHHHCCHHHH
MNL
HCC
>Mature Secondary Structure
MRIKLVGIFTCMIVIVGIFIVYTNQSIGKEPIKTNYETRENSINRERNGTSNNIASSFAS
CEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHH
VQAVVNKEYGLPEDYKPEDLVVPNVPFSFSGTLEKSYLRKEAAEALERLFNLAKKEGIQL
HHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEE
NAVSGFRSYDYQKKLYANNVKRKGQEHTDRFSAKPGHSEHQTGLTMDVSSKSANNELELT
EEECCCHHCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCEEEEE
FANTKEGKWLKENAHRAGFIIRYPKGKESITGYAYEPWHIRYVGDIAESIYKKKLTLEEY
EECCCCCCHHHHCCCCCCEEEECCCCCCCCCCEEECCEEEEEHHHHHHHHHHHHCCHHHH
MNL
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]