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The map label for this gene is rpoD [H]

Identifier: 118477905

GI number: 118477905

Start: 2408765

End: 2409307

Strand: Direct

Name: rpoD [H]

Synonym: BALH_2250

Alternate gene names: 118477905

Gene position: 2408765-2409307 (Clockwise)

Preceding gene: 118477903

Following gene: 118477906

Centisome position: 45.82

GC content: 30.02

Gene sequence:

>543_bases
GTGTGGAAATTGGAACAGACGTTTATTGAAAAGTGTAATCATGATGAGCTGGACTATGTTATAAAAGACTATTGGCAAGA
TGTATGGAATTATTCATTTATTATTACGAAAGATCCACACTTATCAGATGATATCACGCAAGATGTATTTATAAAGGTAT
TTAAAAATTGGAACTCATTTCGAAAGGAGTCATCTATTAAAACGTGGATATTAAAAATTACAAGAAATACGGCAATAAAT
TATTTGAAATCATCTTATTTTAAAAGAATATCTTTAGTAGGATTTTTTAGTGATGATAAACAAACTTTGTCGGCAGAACA
AGAGTTTTTTAAGCAAGAAGAATTGAATGATGTGTGGAAAGTTGTATTAAAACTACCTAAAAAGCACCGTGAAATAATAA
TATTGGACGCAAAATATGAATTATCTTATGAAGAAATGGCTGAAACACTAGGAGTATCCATTGGAACTGTAAAATCTAGA
TTAAGTAGAGCAAGAAGTAAGGTTTCAAAACTAATAGGGGAGGGTGGTAGTGATGAACAATAA

Upstream 100 bases:

>100_bases
AAAAGATAATAAATGGAACAAATGAAACTTGTATCTTGTCTATATATTGAAACCATAATAAAAGTGAGGGTAGTTTTATG
TTTATTCAAATAAGTTTGAG

Downstream 100 bases:

>100_bases
AAAAAATCCTGACTGGTATAGAAAATTAAAAAAAGGCCCAATGGAACACCGTAAAGACGAAGAAGAATATATTTATAAAA
TAAAGCAATCTATATATCAA

Product: RNA polymerase sigma-70 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MWKLEQTFIEKCNHDELDYVIKDYWQDVWNYSFIITKDPHLSDDITQDVFIKVFKNWNSFRKESSIKTWILKITRNTAIN
YLKSSYFKRISLVGFFSDDKQTLSAEQEFFKQEELNDVWKVVLKLPKKHREIIILDAKYELSYEEMAETLGVSIGTVKSR
LSRARSKVSKLIGEGGSDEQ

Sequences:

>Translated_180_residues
MWKLEQTFIEKCNHDELDYVIKDYWQDVWNYSFIITKDPHLSDDITQDVFIKVFKNWNSFRKESSIKTWILKITRNTAIN
YLKSSYFKRISLVGFFSDDKQTLSAEQEFFKQEELNDVWKVVLKLPKKHREIIILDAKYELSYEEMAETLGVSIGTVKSR
LSRARSKVSKLIGEGGSDEQ
>Mature_180_residues
MWKLEQTFIEKCNHDELDYVIKDYWQDVWNYSFIITKDPHLSDDITQDVFIKVFKNWNSFRKESSIKTWILKITRNTAIN
YLKSSYFKRISLVGFFSDDKQTLSAEQEFFKQEELNDVWKVVLKLPKKHREIIILDAKYELSYEEMAETLGVSIGTVKSR
LSRARSKVSKLIGEGGSDEQ

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor contributes to oxidative stress resistance [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=142, Percent_Identity=35.9154929577465, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014296
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21321; Mature: 21321

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWKLEQTFIEKCNHDELDYVIKDYWQDVWNYSFIITKDPHLSDDITQDVFIKVFKNWNSF
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
RKESSIKTWILKITRNTAINYLKSSYFKRISLVGFFSDDKQTLSAEQEFFKQEELNDVWK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHH
VVLKLPKKHREIIILDAKYELSYEEMAETLGVSIGTVKSRLSRARSKVSKLIGEGGSDEQ
HHHHCCCCCCEEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MWKLEQTFIEKCNHDELDYVIKDYWQDVWNYSFIITKDPHLSDDITQDVFIKVFKNWNSF
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
RKESSIKTWILKITRNTAINYLKSSYFKRISLVGFFSDDKQTLSAEQEFFKQEELNDVWK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHH
VVLKLPKKHREIIILDAKYELSYEEMAETLGVSIGTVKSRLSRARSKVSKLIGEGGSDEQ
HHHHCCCCCCEEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]