| Definition | Bacillus thuringiensis str. Al Hakam chromosome, complete genome. |
|---|---|
| Accession | NC_008600 |
| Length | 5,257,091 |
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The map label for this gene is pbpC [H]
Identifier: 118477903
GI number: 118477903
Start: 2406450
End: 2408417
Strand: Direct
Name: pbpC [H]
Synonym: BALH_2248
Alternate gene names: 118477903
Gene position: 2406450-2408417 (Clockwise)
Preceding gene: 118477902
Following gene: 118477905
Centisome position: 45.78
GC content: 35.77
Gene sequence:
>1968_bases TTGAAAAAATTATGGATGCTGCTTTTCTTTTGTTTTGCAGTTATATTGGTAGGATGTAATAAAAACGAATCGCCAAAACA AGCATTTGAAGAATATATAAATTTATGGAATGATAGAGAATTTGCAAATATGTATGATCGTTTATCTGAACATGCCCAAA AAACGATTTCTAAAAAGGAATTCACAGAGAAATATCAAAAAATTTATGAAGGGATTGGCGTTAAGAATTTAAACGTTAAA ACGAAAGGAGAGAATGCTAAAGATAAAGAACTTTTTCTTTTTGAAGTTAAGATGGATACGGATGGAGGAACAGCTTCATT TATCCATGAAGCAAAACTTGTGAAAGATAAAGATGCTTGGAAAGTAGATTGGACACCAGATTTCATTTTTCCAGGTATGA AAAAAGATTACAAAGTACGTATGCAAACAGAAGATGGAAAACGCGGAGAAATATACGATCGAAATGGGAAAGGTCTTGCA ACGAATGGTAAAGCGACTGAGGTTGGAATTATTCCAGAGAAACTAGGCGAAACGGCGGCGCAAACAAAAGAAATAGTAGC ACAGTTACTGGATATGTCTATAGAAGAGGTCGATCAGAAGCTTACAGCGAAATGGATAAAACCAGACTCCTTTGTACCAA TTGGTATTTTAAAAGAGGGAACTAGACAGAATGATTATATTGAATTAGAAGGAGTATCATCTCGCCCAGTAAATATTCGT ATGTATTCATTAGGGGAAGCAGCGGCACACTTAACTGGCTATATAGGAAATGTGAATGCAGAGGAGTTAAAATCGCTTCA AAAAAGAGGTTATCAAGCTGATGATTTAATAGGTAAGACAGGTTTAGAGAAAGTACTGGAAAATAAATTGCGTGGTGAAA AGGGTGGACGCGTATTTATAGAAGATGAGAGTGGGAAAGAGATTAAAAACGTAGCAAAAAAAGAAGCGAAAGCAGGAGAA AATGTTACGTTAACAATTGATGCTGCAATTCAAGAAAAAATCTATAATGAGATGAAAAATGAAGCAGGCTCTAGTGCAGC GATCAATCCTAAAACAGGTGAAACAATCGCACTAGTAAGTAGCCCTGCTTATAACCCAAATACAATAGTTAGAGGAGCAT CAAAGGCCCAACGAGAAGCATGGAATAACGACTTGAAACTACCAATGATGAATCGTTTCACACAAGCATTTGTGCCAGGT TCCGTATTTAAAACGATTACAGGTGCAATTGGTTTGGAAACAAACACAATAAAACCTAAGGAAGAATTTAATATTCAAGG ACTAAAGTGGACAAAAGATTCCTCTTGGGGAAATTATTATGTAACACGTGTGAAGGATGCAAGTCCAATTGATTTTGACA AGGCAATGAAGTACTCAGATAATATTTATTTTGCTCAACAAGCCTTGAAGATGGGAAAAGATAAGTATGTAAATGAATTT AAGAAATACGGATTCCATGAAAAATTACCAATCGAATACGAATTTCCTATTTCAATCATTGCAAGAGATGGGATAAAAAA TGATATTCAACTAGCAGACACGGGATACGGACAAGGACAAGTATTAATGACCCCACTTCATTTAGCGTTAACATATGCAC CGATTGTAAATGAAGGGAATATTCCGTCGCCCCATCTTTTAAAAGAAGCAAAAGTAACGGGAAATTGGAAAGAAAATGTG GTTTCTAAAAAGAATCAAGACATATTAAAGAATGCATTAATAAAAGTCATTAATGACTCTGATGGAGCGGGGAGAATTGC TAAGGTTGATGGTGTAACGCTTGCGGGTAAAACTGGTACAGCAGAGCTGAAAGAGTCGAAAGAAGCAGACGGAAAAGAAC TTGGATGGTTTGCAGCTTTTGATGCAAATGAGCCAGATATGATTGTTACAATGATGATTGAAGATGTAAAAGGAAGAGGA GGGAGCAATGTTCCAGGTGAAAAAGTAAAACATGTTTTTCAGAAATAA
Upstream 100 bases:
>100_bases ACTTGATCATAAATTAATTTTTTTGTAAATGTGGAACAATTTCATTACTTATACTGTCTATTAAGCGTTACAACATTTTT AACTAAGGGAGAAGATTGAA
Downstream 100 bases:
>100_bases TACCTTAGTATAAGGGGAAATCTTTTAGTAAATTCACTATACTTTTGCTTAACTTAAAGAACAATTAAGTATCACAAAAG CATTCTTCTTAATCGAGAAT
Product: penicillin-binding protein
Products: NA
Alternate protein names: PBP 3; PSPB20; Penicillin-binding protein C [H]
Number of amino acids: Translated: 655; Mature: 655
Protein sequence:
>655_residues MKKLWMLLFFCFAVILVGCNKNESPKQAFEEYINLWNDREFANMYDRLSEHAQKTISKKEFTEKYQKIYEGIGVKNLNVK TKGENAKDKELFLFEVKMDTDGGTASFIHEAKLVKDKDAWKVDWTPDFIFPGMKKDYKVRMQTEDGKRGEIYDRNGKGLA TNGKATEVGIIPEKLGETAAQTKEIVAQLLDMSIEEVDQKLTAKWIKPDSFVPIGILKEGTRQNDYIELEGVSSRPVNIR MYSLGEAAAHLTGYIGNVNAEELKSLQKRGYQADDLIGKTGLEKVLENKLRGEKGGRVFIEDESGKEIKNVAKKEAKAGE NVTLTIDAAIQEKIYNEMKNEAGSSAAINPKTGETIALVSSPAYNPNTIVRGASKAQREAWNNDLKLPMMNRFTQAFVPG SVFKTITGAIGLETNTIKPKEEFNIQGLKWTKDSSWGNYYVTRVKDASPIDFDKAMKYSDNIYFAQQALKMGKDKYVNEF KKYGFHEKLPIEYEFPISIIARDGIKNDIQLADTGYGQGQVLMTPLHLALTYAPIVNEGNIPSPHLLKEAKVTGNWKENV VSKKNQDILKNALIKVINDSDGAGRIAKVDGVTLAGKTGTAELKESKEADGKELGWFAAFDANEPDMIVTMMIEDVKGRG GSNVPGEKVKHVFQK
Sequences:
>Translated_655_residues MKKLWMLLFFCFAVILVGCNKNESPKQAFEEYINLWNDREFANMYDRLSEHAQKTISKKEFTEKYQKIYEGIGVKNLNVK TKGENAKDKELFLFEVKMDTDGGTASFIHEAKLVKDKDAWKVDWTPDFIFPGMKKDYKVRMQTEDGKRGEIYDRNGKGLA TNGKATEVGIIPEKLGETAAQTKEIVAQLLDMSIEEVDQKLTAKWIKPDSFVPIGILKEGTRQNDYIELEGVSSRPVNIR MYSLGEAAAHLTGYIGNVNAEELKSLQKRGYQADDLIGKTGLEKVLENKLRGEKGGRVFIEDESGKEIKNVAKKEAKAGE NVTLTIDAAIQEKIYNEMKNEAGSSAAINPKTGETIALVSSPAYNPNTIVRGASKAQREAWNNDLKLPMMNRFTQAFVPG SVFKTITGAIGLETNTIKPKEEFNIQGLKWTKDSSWGNYYVTRVKDASPIDFDKAMKYSDNIYFAQQALKMGKDKYVNEF KKYGFHEKLPIEYEFPISIIARDGIKNDIQLADTGYGQGQVLMTPLHLALTYAPIVNEGNIPSPHLLKEAKVTGNWKENV VSKKNQDILKNALIKVINDSDGAGRIAKVDGVTLAGKTGTAELKESKEADGKELGWFAAFDANEPDMIVTMMIEDVKGRG GSNVPGEKVKHVFQK >Mature_655_residues MKKLWMLLFFCFAVILVGCNKNESPKQAFEEYINLWNDREFANMYDRLSEHAQKTISKKEFTEKYQKIYEGIGVKNLNVK TKGENAKDKELFLFEVKMDTDGGTASFIHEAKLVKDKDAWKVDWTPDFIFPGMKKDYKVRMQTEDGKRGEIYDRNGKGLA TNGKATEVGIIPEKLGETAAQTKEIVAQLLDMSIEEVDQKLTAKWIKPDSFVPIGILKEGTRQNDYIELEGVSSRPVNIR MYSLGEAAAHLTGYIGNVNAEELKSLQKRGYQADDLIGKTGLEKVLENKLRGEKGGRVFIEDESGKEIKNVAKKEAKAGE NVTLTIDAAIQEKIYNEMKNEAGSSAAINPKTGETIALVSSPAYNPNTIVRGASKAQREAWNNDLKLPMMNRFTQAFVPG SVFKTITGAIGLETNTIKPKEEFNIQGLKWTKDSSWGNYYVTRVKDASPIDFDKAMKYSDNIYFAQQALKMGKDKYVNEF KKYGFHEKLPIEYEFPISIIARDGIKNDIQLADTGYGQGQVLMTPLHLALTYAPIVNEGNIPSPHLLKEAKVTGNWKENV VSKKNQDILKNALIKVINDSDGAGRIAKVDGVTLAGKTGTAELKESKEADGKELGWFAAFDANEPDMIVTMMIEDVKGRG GSNVPGEKVKHVFQK
Specific function: Cell Wall Formation; Pbp-2 Is Responsible For The Determination Of The Rod Shape Of The Cell. Its Synthesize Cross- Linked Peptidoglycan From The Lipid Intermediates. [C]
COG id: COG0768
COG function: function code M; Cell division protein FtsI/penicillin-binding protein 2
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1786854, Length=537, Percent_Identity=25.512104283054, Blast_Score=143, Evalue=4e-35, Organism=Escherichia coli, GI1786272, Length=552, Percent_Identity=24.8188405797101, Blast_Score=121, Evalue=1e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR007887 - InterPro: IPR005311 - InterPro: IPR001460 [H]
Pfam domain/function: PF05223 MecA_N; PF03717 PBP_dimer; PF00905 Transpeptidase [H]
EC number: NA
Molecular weight: Translated: 73188; Mature: 73188
Theoretical pI: Translated: 8.43; Mature: 8.43
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLWMLLFFCFAVILVGCNKNESPKQAFEEYINLWNDREFANMYDRLSEHAQKTISKKE CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH FTEKYQKIYEGIGVKNLNVKTKGENAKDKELFLFEVKMDTDGGTASFIHEAKLVKDKDAW HHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCE KVDWTPDFIFPGMKKDYKVRMQTEDGKRGEIYDRNGKGLATNGKATEVGIIPEKLGETAA EECCCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCEEECCCCCEEECCCHHHHHHHHH QTKEIVAQLLDMSIEEVDQKLTAKWIKPDSFVPIGILKEGTRQNDYIELEGVSSRPVNIR HHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEHHCCCCCCCCCEEEEECCCCCCEEEE MYSLGEAAAHLTGYIGNVNAEELKSLQKRGYQADDLIGKTGLEKVLENKLRGEKGGRVFI EEECCHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE EDESGKEIKNVAKKEAKAGENVTLTIDAAIQEKIYNEMKNEAGSSAAINPKTGETIALVS ECCCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEE SPAYNPNTIVRGASKAQREAWNNDLKLPMMNRFTQAFVPGSVFKTITGAIGLETNTIKPK CCCCCCCCEEECCHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCH EEFNIQGLKWTKDSSWGNYYVTRVKDASPIDFDKAMKYSDNIYFAQQALKMGKDKYVNEF HHCCCCCEEEECCCCCCCEEEEEECCCCCCCHHHHHHHCCCHHHHHHHHHCCHHHHHHHH KKYGFHEKLPIEYEFPISIIARDGIKNDIQLADTGYGQGQVLMTPLHLALTYAPIVNEGN HHCCCCCCCCEEEECCEEEEECCCCCCCEEEEECCCCCCCEEEEHHHHHHEECCCCCCCC IPSPHLLKEAKVTGNWKENVVSKKNQDILKNALIKVINDSDGAGRIAKVDGVTLAGKTGT CCCCHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHEECCCCCCCCEEEECCEEEECCCCC AELKESKEADGKELGWFAAFDANEPDMIVTMMIEDVKGRGGSNVPGEKVKHVFQK HHHHHHCCCCCCCCCEEEEECCCCCCEEEEEEEHHHCCCCCCCCCHHHHHHHHCC >Mature Secondary Structure MKKLWMLLFFCFAVILVGCNKNESPKQAFEEYINLWNDREFANMYDRLSEHAQKTISKKE CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH FTEKYQKIYEGIGVKNLNVKTKGENAKDKELFLFEVKMDTDGGTASFIHEAKLVKDKDAW HHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCE KVDWTPDFIFPGMKKDYKVRMQTEDGKRGEIYDRNGKGLATNGKATEVGIIPEKLGETAA EECCCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCEEECCCCCEEECCCHHHHHHHHH QTKEIVAQLLDMSIEEVDQKLTAKWIKPDSFVPIGILKEGTRQNDYIELEGVSSRPVNIR HHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEHHCCCCCCCCCEEEEECCCCCCEEEE MYSLGEAAAHLTGYIGNVNAEELKSLQKRGYQADDLIGKTGLEKVLENKLRGEKGGRVFI EEECCHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE EDESGKEIKNVAKKEAKAGENVTLTIDAAIQEKIYNEMKNEAGSSAAINPKTGETIALVS ECCCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEE SPAYNPNTIVRGASKAQREAWNNDLKLPMMNRFTQAFVPGSVFKTITGAIGLETNTIKPK CCCCCCCCEEECCHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCH EEFNIQGLKWTKDSSWGNYYVTRVKDASPIDFDKAMKYSDNIYFAQQALKMGKDKYVNEF HHCCCCCEEEECCCCCCCEEEEEECCCCCCCHHHHHHHCCCHHHHHHHHHCCHHHHHHHH KKYGFHEKLPIEYEFPISIIARDGIKNDIQLADTGYGQGQVLMTPLHLALTYAPIVNEGN HHCCCCCCCCEEEECCEEEEECCCCCCCEEEEECCCCCCCEEEEHHHHHHEECCCCCCCC IPSPHLLKEAKVTGNWKENVVSKKNQDILKNALIKVINDSDGAGRIAKVDGVTLAGKTGT CCCCHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHEECCCCCCCCEEEECCEEEECCCCC AELKESKEADGKELGWFAAFDANEPDMIVTMMIEDVKGRGGSNVPGEKVKHVFQK HHHHHHCCCCCCCCCEEEEECCCCCCEEEEEEEHHHCCCCCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969502; 9384377; 3145906 [H]