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The map label for this gene is cydB [H]

Identifier: 118477403

GI number: 118477403

Start: 1874833

End: 1875954

Strand: Direct

Name: cydB [H]

Synonym: BALH_1723

Alternate gene names: 118477403

Gene position: 1874833-1875954 (Clockwise)

Preceding gene: 118477402

Following gene: 118477404

Centisome position: 35.66

GC content: 36.1

Gene sequence:

>1122_bases
GTGGAATTACTATTTACTTATTCGTTCGTACTATTAAAGGACATGAGAATAAGAAAACGAAACAGGATTCTCAAAGCCAT
GATCCATTTGATAAGGAGGAAGAGTATGTTATCTCTTAATGAGTTGTGGTTTATCATTATTGCAGTTTTATTCGTAGGCT
TCTTTGTGCTTGAAGGTTTCGATTTCGGTGTAGGTATAGTTTCAAGGTTTTTAGGGGAAAACGATTTAGAGAAAAGAATA
TACTTAAATACAATTGGTCCATTTTGGCACGCGAATGAAGTATGGCTTGTTTGTGCTGGTGGTGCTATGTTCGCGGCATT
CCCACACTGGTATGCAACTTTATTTAGTGGGTTTTACATTCCTTTTGTATTTATGCTTCTTGCTTTAATTATAAGAGGTG
TTTCCTTTAAATTCCGTGCGAAAATAGACAATCATAAATGGAAAGGTTTTTGGGATTGGGGTATGTTTTTAGGAAGTTTA
CTACCACCTATCCTGTGGGGAGTTGCCATTGCTAATTTTATGGTAGGTATTCCAATTGATGAGACGAAAAATGCTGTAGG
TGGATTCTTACAATTACTTCATCCATTTGCATTACTTGGAGGAGTTATGTTCCTTCTGTTATGTATTGTTCACGGATTGC
AATTCCTGACTATACGTACAACTGGTAAGTTAAGAGAACGTGCACGTATTGCTGCTTTGAAAATTGCACCGCTTGCAATT
ATCGCACTTCTTATTTTTGCTGGTATTGGATTATGGAAAACAGATATTTTCACTGGTCATGGTAAAGAGTGGATTATGGT
TCCAATCGGAGCTTTTGTAGCATTATGTGCGTCAACATTATTAAATAAAAGAAGAAGAGATGGTTGGGCTTTCGTTATGA
CGAGTTTAACAATCATTTTACTAAGTGCGAGTGTGTTTGCCGGCATGTTCCCACGTGTCTTAATTAGTTCGTTAGGGTCA
ATATACGATTTAACAATTTATAATGCAGCATCAGGGGATTATGCACTAAAACTGATGACGTATTTTTCAATTGCTATATT
GCCATTTGTATTGGGAAGTCAAATATGGAGTTTTTATGTGTTTAGACAACCTGTTAAGTCAGATAAAGATTTGGAGTACT
AA

Upstream 100 bases:

>100_bases
TTCGGTGTTATGAAAACGGAAGATGCTGTATCTCCAAATGTTACGTTCGGAGAAGTGTTATTCTCTTTAGTTTCATTCAC
ATCACTATATTTAATTATAG

Downstream 100 bases:

>100_bases
TGAAAAGAAAAAGAGGACTTCCGTCGTATCCTGGTAGCCGAGTTTTATATGTAGTGTTAACAATCATTAGCATTTTAGAA
GCTTTTAGTATTATTGCACA

Product: cytochrome d ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MELLFTYSFVLLKDMRIRKRNRILKAMIHLIRRKSMLSLNELWFIIIAVLFVGFFVLEGFDFGVGIVSRFLGENDLEKRI
YLNTIGPFWHANEVWLVCAGGAMFAAFPHWYATLFSGFYIPFVFMLLALIIRGVSFKFRAKIDNHKWKGFWDWGMFLGSL
LPPILWGVAIANFMVGIPIDETKNAVGGFLQLLHPFALLGGVMFLLLCIVHGLQFLTIRTTGKLRERARIAALKIAPLAI
IALLIFAGIGLWKTDIFTGHGKEWIMVPIGAFVALCASTLLNKRRRDGWAFVMTSLTIILLSASVFAGMFPRVLISSLGS
IYDLTIYNAASGDYALKLMTYFSIAILPFVLGSQIWSFYVFRQPVKSDKDLEY

Sequences:

>Translated_373_residues
MELLFTYSFVLLKDMRIRKRNRILKAMIHLIRRKSMLSLNELWFIIIAVLFVGFFVLEGFDFGVGIVSRFLGENDLEKRI
YLNTIGPFWHANEVWLVCAGGAMFAAFPHWYATLFSGFYIPFVFMLLALIIRGVSFKFRAKIDNHKWKGFWDWGMFLGSL
LPPILWGVAIANFMVGIPIDETKNAVGGFLQLLHPFALLGGVMFLLLCIVHGLQFLTIRTTGKLRERARIAALKIAPLAI
IALLIFAGIGLWKTDIFTGHGKEWIMVPIGAFVALCASTLLNKRRRDGWAFVMTSLTIILLSASVFAGMFPRVLISSLGS
IYDLTIYNAASGDYALKLMTYFSIAILPFVLGSQIWSFYVFRQPVKSDKDLEY
>Mature_373_residues
MELLFTYSFVLLKDMRIRKRNRILKAMIHLIRRKSMLSLNELWFIIIAVLFVGFFVLEGFDFGVGIVSRFLGENDLEKRI
YLNTIGPFWHANEVWLVCAGGAMFAAFPHWYATLFSGFYIPFVFMLLALIIRGVSFKFRAKIDNHKWKGFWDWGMFLGSL
LPPILWGVAIANFMVGIPIDETKNAVGGFLQLLHPFALLGGVMFLLLCIVHGLQFLTIRTTGKLRERARIAALKIAPLAI
IALLIFAGIGLWKTDIFTGHGKEWIMVPIGAFVALCASTLLNKRRRDGWAFVMTSLTIILLSASVFAGMFPRVLISSLGS
IYDLTIYNAASGDYALKLMTYFSIAILPFVLGSQIWSFYVFRQPVKSDKDLEY

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=367, Percent_Identity=35.6948228882834, Blast_Score=227, Evalue=9e-61,
Organism=Escherichia coli, GI1787213, Length=356, Percent_Identity=33.1460674157303, Blast_Score=194, Evalue=7e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 42283; Mature: 42283

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLFTYSFVLLKDMRIRKRNRILKAMIHLIRRKSMLSLNELWFIIIAVLFVGFFVLEGF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DFGVGIVSRFLGENDLEKRIYLNTIGPFWHANEVWLVCAGGAMFAAFPHWYATLFSGFYI
CHHHHHHHHHHCCCCCCCEEEEEECCCCEECCCEEEEEECCHHHHHHHHHHHHHHHHHHH
PFVFMLLALIIRGVSFKFRAKIDNHKWKGFWDWGMFLGSLLPPILWGVAIANFMVGIPID
HHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ETKNAVGGFLQLLHPFALLGGVMFLLLCIVHGLQFLTIRTTGKLRERARIAALKIAPLAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECCHHHHHHHHHHHHHHHHHHH
IALLIFAGIGLWKTDIFTGHGKEWIMVPIGAFVALCASTLLNKRRRDGWAFVMTSLTIIL
HHHHHHHCCCHHHHCEEECCCCCEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LSASVFAGMFPRVLISSLGSIYDLTIYNAASGDYALKLMTYFSIAILPFVLGSQIWSFYV
HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRQPVKSDKDLEY
HHCCCCCCCCCCC
>Mature Secondary Structure
MELLFTYSFVLLKDMRIRKRNRILKAMIHLIRRKSMLSLNELWFIIIAVLFVGFFVLEGF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DFGVGIVSRFLGENDLEKRIYLNTIGPFWHANEVWLVCAGGAMFAAFPHWYATLFSGFYI
CHHHHHHHHHHCCCCCCCEEEEEECCCCEECCCEEEEEECCHHHHHHHHHHHHHHHHHHH
PFVFMLLALIIRGVSFKFRAKIDNHKWKGFWDWGMFLGSLLPPILWGVAIANFMVGIPID
HHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ETKNAVGGFLQLLHPFALLGGVMFLLLCIVHGLQFLTIRTTGKLRERARIAALKIAPLAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECCHHHHHHHHHHHHHHHHHHH
IALLIFAGIGLWKTDIFTGHGKEWIMVPIGAFVALCASTLLNKRRRDGWAFVMTSLTIIL
HHHHHHHCCCHHHHCEEECCCCCEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LSASVFAGMFPRVLISSLGSIYDLTIYNAASGDYALKLMTYFSIAILPFVLGSQIWSFYV
HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRQPVKSDKDLEY
HHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]