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The map label for this gene is ugpB [H]

Identifier: 118476257

GI number: 118476257

Start: 587710

End: 589086

Strand: Direct

Name: ugpB [H]

Synonym: BALH_0509

Alternate gene names: 118476257

Gene position: 587710-589086 (Clockwise)

Preceding gene: 118476256

Following gene: 118476258

Centisome position: 11.18

GC content: 36.31

Gene sequence:

>1377_bases
ATGAGTCTAGTTAAAAAAGGTGCTGCTCTATTAATGGTAGCAACAATGGCATTATCTAGTGCTGCTTGTTCAAATAGTAA
AACAGAGGGAAAACCTGAAGCACAGGCAAAAGTAGCACCAGTTGAAAAAAATGGTGATAAAACTGTAATTCGTTTTTGGC
ATGCGATGGGTGGAAAAACACAAGGTGTACTAGATGGGCTTGTTGCAGACTATAATAAGTCACAAAATAAATATGAGATA
AAGGCAGAATTCCAAGGGACATATGAAGAGTCTTTAACGAAATTTAAAACGATGTCTGCTACGAAAGAAGCACCAGCTCT
TGTTCAGTCGAGTGAAATTACAACAAAATATATGATTGATAGCAAAAAGATTACGCCAATTGATAGTTGGATAAAAAAAG
ATAAGTATGATACTTCAAAATTGGAAAAAGCAATTACAAATTATTATTCAGTTGATGGAAAAATGTATTCTATGCCATTT
AATTCATCTACACCAGTATTAATTTATAATAAAGATGCTTTCGCAAAGGCGGGCTTAGATCCAGAGAAAGCTCCGAAAAC
GTATGCGGAATTACAAGAAGCAGCGAAAAAGTTAACGATTAAAGAAGGCGGAAATGTAAAGCAATATGGATTCTCAATGT
TGAACTATGGTTGGTTCTTTGAAGAATTGTTAGCGACACAAGGCGCTTTATATGTAGATAATGAAAATGGTCGTAAAGAT
GCTGCAAAGAAAGCAGTATTTAACGGTAAAGAAGGACAGAAAGTATTTGGGATGCTAGATGAGTTAAATAAAGCTGGTGC
ATTAGGAAAATATGGAGCAAGTTGGGATGATATTCGTGCTGCGTTCCAGTCTGGCCAAGTTGCTGTGTATTTAGATTCTT
CAGCTGGTATTCGTGATTTAATTGACGCATCTAAGTTTAATGTAGGCGTTTCGTATATTCCATACCCAGAAGATTCGAAA
CAAAATGGTGTTGTTATCGGAGGTGCATCATTATGGATGACGAATATGGTTTCAGAAGAAACACAACAAGGTGCTTGGGA
CTTTATGAAATATTTAACGAAGCCAGACGTACAAGCAAAGTGGCATACTGCAACAGGTTATTTCTCTATTAATCCGGACG
CATATAATGAACCATTAGTGAAAGAGCAATATGAAAAATATCCACAGTTGAAAGTAACAGTAGATCAATTGCAAGCGACG
AAACAATCTCCAGCAACACAAGGTGCTTTAATTAGTGTATTCCCAGAATCAAGAGATGCAGTTGTAAAAGCGTTAGAAGC
AATGTATGATGGGAAAAATAGTAAAGAAGCGCTAGACGAAGCTGCAAAAGCAACAGATAGAGCAATTAGTATTTCAGCTC
GTACGAGTCAAAAATAA

Upstream 100 bases:

>100_bases
CGTTATACCAACATTGATTCTATTATTTTTAGGACAAAAGCAATTACAACAAGGATTAACAAAAGGTGCAATTAAATAAC
TAAGAGAAGGTGAGATTAAA

Downstream 100 bases:

>100_bases
GAGAAAGCCGTATCCAAAAAAGGATACGGCTTTCTTTAGGAGATAAGAGATCAAAAAAATGAAGAAGTCTTATCTCTTTT
ATATGAGTAAAGGGTCTAGA

Product: ABC transporter glycerol-3-phosphate periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 458; Mature: 457

Protein sequence:

>458_residues
MSLVKKGAALLMVATMALSSAACSNSKTEGKPEAQAKVAPVEKNGDKTVIRFWHAMGGKTQGVLDGLVADYNKSQNKYEI
KAEFQGTYEESLTKFKTMSATKEAPALVQSSEITTKYMIDSKKITPIDSWIKKDKYDTSKLEKAITNYYSVDGKMYSMPF
NSSTPVLIYNKDAFAKAGLDPEKAPKTYAELQEAAKKLTIKEGGNVKQYGFSMLNYGWFFEELLATQGALYVDNENGRKD
AAKKAVFNGKEGQKVFGMLDELNKAGALGKYGASWDDIRAAFQSGQVAVYLDSSAGIRDLIDASKFNVGVSYIPYPEDSK
QNGVVIGGASLWMTNMVSEETQQGAWDFMKYLTKPDVQAKWHTATGYFSINPDAYNEPLVKEQYEKYPQLKVTVDQLQAT
KQSPATQGALISVFPESRDAVVKALEAMYDGKNSKEALDEAAKATDRAISISARTSQK

Sequences:

>Translated_458_residues
MSLVKKGAALLMVATMALSSAACSNSKTEGKPEAQAKVAPVEKNGDKTVIRFWHAMGGKTQGVLDGLVADYNKSQNKYEI
KAEFQGTYEESLTKFKTMSATKEAPALVQSSEITTKYMIDSKKITPIDSWIKKDKYDTSKLEKAITNYYSVDGKMYSMPF
NSSTPVLIYNKDAFAKAGLDPEKAPKTYAELQEAAKKLTIKEGGNVKQYGFSMLNYGWFFEELLATQGALYVDNENGRKD
AAKKAVFNGKEGQKVFGMLDELNKAGALGKYGASWDDIRAAFQSGQVAVYLDSSAGIRDLIDASKFNVGVSYIPYPEDSK
QNGVVIGGASLWMTNMVSEETQQGAWDFMKYLTKPDVQAKWHTATGYFSINPDAYNEPLVKEQYEKYPQLKVTVDQLQAT
KQSPATQGALISVFPESRDAVVKALEAMYDGKNSKEALDEAAKATDRAISISARTSQK
>Mature_457_residues
SLVKKGAALLMVATMALSSAACSNSKTEGKPEAQAKVAPVEKNGDKTVIRFWHAMGGKTQGVLDGLVADYNKSQNKYEIK
AEFQGTYEESLTKFKTMSATKEAPALVQSSEITTKYMIDSKKITPIDSWIKKDKYDTSKLEKAITNYYSVDGKMYSMPFN
SSTPVLIYNKDAFAKAGLDPEKAPKTYAELQEAAKKLTIKEGGNVKQYGFSMLNYGWFFEELLATQGALYVDNENGRKDA
AKKAVFNGKEGQKVFGMLDELNKAGALGKYGASWDDIRAAFQSGQVAVYLDSSAGIRDLIDASKFNVGVSYIPYPEDSKQ
NGVVIGGASLWMTNMVSEETQQGAWDFMKYLTKPDVQAKWHTATGYFSINPDAYNEPLVKEQYEKYPQLKVTVDQLQATK
QSPATQGALISVFPESRDAVVKALEAMYDGKNSKEALDEAAKATDRAISISARTSQK

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=413, Percent_Identity=35.8353510895884, Blast_Score=216, Evalue=3e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 50338; Mature: 50207

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01037 SBP_BACTERIAL_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLVKKGAALLMVATMALSSAACSNSKTEGKPEAQAKVAPVEKNGDKTVIRFWHAMGGKT
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCC
QGVLDGLVADYNKSQNKYEIKAEFQGTYEESLTKFKTMSATKEAPALVQSSEITTKYMID
HHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCHHCCHHHCCCCCCEEEEEC
SKKITPIDSWIKKDKYDTSKLEKAITNYYSVDGKMYSMPFNSSTPVLIYNKDAFAKAGLD
CCCCCCHHHHHHHCCCCHHHHHHHHHHHEECCCEEEECCCCCCCCEEEECCCHHHHCCCC
PEKAPKTYAELQEAAKKLTIKEGGNVKQYGFSMLNYGWFFEELLATQGALYVDNENGRKD
HHHCHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH
AAKKAVFNGKEGQKVFGMLDELNKAGALGKYGASWDDIRAAFQSGQVAVYLDSSAGIRDL
HHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHH
IDASKFNVGVSYIPYPEDSKQNGVVIGGASLWMTNMVSEETQQGAWDFMKYLTKPDVQAK
HHHHHHCCCEEECCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEE
WHTATGYFSINPDAYNEPLVKEQYEKYPQLKVTVDQLQATKQSPATQGALISVFPESRDA
EEEEEEEEEECCCCCCCCHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCCEEEECCCCHHH
VVKALEAMYDGKNSKEALDEAAKATDRAISISARTSQK
HHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEECCCCCC
>Mature Secondary Structure 
SLVKKGAALLMVATMALSSAACSNSKTEGKPEAQAKVAPVEKNGDKTVIRFWHAMGGKT
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCC
QGVLDGLVADYNKSQNKYEIKAEFQGTYEESLTKFKTMSATKEAPALVQSSEITTKYMID
HHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCHHCCHHHCCCCCCEEEEEC
SKKITPIDSWIKKDKYDTSKLEKAITNYYSVDGKMYSMPFNSSTPVLIYNKDAFAKAGLD
CCCCCCHHHHHHHCCCCHHHHHHHHHHHEECCCEEEECCCCCCCCEEEECCCHHHHCCCC
PEKAPKTYAELQEAAKKLTIKEGGNVKQYGFSMLNYGWFFEELLATQGALYVDNENGRKD
HHHCHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH
AAKKAVFNGKEGQKVFGMLDELNKAGALGKYGASWDDIRAAFQSGQVAVYLDSSAGIRDL
HHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHH
IDASKFNVGVSYIPYPEDSKQNGVVIGGASLWMTNMVSEETQQGAWDFMKYLTKPDVQAK
HHHHHHCCCEEECCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEE
WHTATGYFSINPDAYNEPLVKEQYEKYPQLKVTVDQLQATKQSPATQGALISVFPESRDA
EEEEEEEEEECCCCCCCCHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCCEEEECCCCHHH
VVKALEAMYDGKNSKEALDEAAKATDRAISISARTSQK
HHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]