Click here to switch to the map view.

The map label for this gene is oppB [H]

Identifier: 118475950

GI number: 118475950

Start: 192787

End: 193704

Strand: Direct

Name: oppB [H]

Synonym: BALH_0184

Alternate gene names: 118475950

Gene position: 192787-193704 (Clockwise)

Preceding gene: 118475949

Following gene: 118475951

Centisome position: 3.67

GC content: 35.73

Gene sequence:

>918_bases
GTGTATGTAATTAAAAAATTATCGGTTATGGTGTTCACACTATGGGTTATTACGACAGTGACATTTCTAATTATGCATAT
TATTCCGGGAGATCCATTTTCATCAGATGCAAAAATCTTTCCTGAAGAAGTGATCCAAAACATGAGGGCGAAGTATCACC
TTGATGAACCGTTATGGAATCAATATGTTGCTTATTTAGACGGTGTAGTTCATTTTGATTTTGGTGAATCCGTTCAGTCG
ACGGGGCAAGGTGTATCAGAGATTATAACGACCGGATTTGGTCCATCAGCGATTATTGGTTTACAAGCACTTATTATTTC
ATTATTAGTCGGAATTGCTGCAGGTACATTTGCTGCTCTTTATCACGGGAGAGTAATTGATTATAGTGTGAGTTTACTTG
CGATTCTCGGTATTTCTATTCCAAGTTTTATTTTAGCACCACTATTTATACAAGTATTCGCTATTCAATTTGAGCTCTTA
CCGGTAGCCTCTTGGGGTACATTTGAACATACGGTATTACCATCTTTCGCATTGGCGCTAGGTCCAATCGCGGTTATTAC
AAGGTTTGTTCGTTCTAATATGATCGAAGTTTTGCAGAGTGATTATATTAAGCTAGCGAGAGCGAAAGGTATACCAATTA
AGAAAATCATTATAAGACACGCTCTTCGAAATGCAATTGTTCCAGTACTTACATTTGTTGGACCGTTAATGGCTGGACTT
TTAACAGGTACTTTCGTTATTGAAAAGATTTTTTCAATTCCTGGTCTCGGGAAATATTTTGTAGATAGTATTTTTAATCG
AGATTATCCAGTGATTATGGGAACAACCATTTTTTATAGTGCACTTTTAATCTTATGTATTTTTATTACAGATATTATTC
ACCGTATTGTTGATCCACGTATTCGTTCTATTACGTAA

Upstream 100 bases:

>100_bases
TAGGATCAAGGCTTTTTGTATTCTAAAAAGAGAAAAGGGAGTAATGGAAAAAGTACGTTCATAAAACAAAGTAAATTCAT
GTGTTTAGGGGGTTATTGAA

Downstream 100 bases:

>100_bases
GGAGGGGGATGTTTAGATGGGGGCTTATGAAATTAATAATCAGTTATTAACGAATGAAGAGAAAAAAGAATTAACGATAA
ATAAAGATCAGCAAAAGATT

Product: oligopeptide ABC transporter permease

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MYVIKKLSVMVFTLWVITTVTFLIMHIIPGDPFSSDAKIFPEEVIQNMRAKYHLDEPLWNQYVAYLDGVVHFDFGESVQS
TGQGVSEIITTGFGPSAIIGLQALIISLLVGIAAGTFAALYHGRVIDYSVSLLAILGISIPSFILAPLFIQVFAIQFELL
PVASWGTFEHTVLPSFALALGPIAVITRFVRSNMIEVLQSDYIKLARAKGIPIKKIIIRHALRNAIVPVLTFVGPLMAGL
LTGTFVIEKIFSIPGLGKYFVDSIFNRDYPVIMGTTIFYSALLILCIFITDIIHRIVDPRIRSIT

Sequences:

>Translated_305_residues
MYVIKKLSVMVFTLWVITTVTFLIMHIIPGDPFSSDAKIFPEEVIQNMRAKYHLDEPLWNQYVAYLDGVVHFDFGESVQS
TGQGVSEIITTGFGPSAIIGLQALIISLLVGIAAGTFAALYHGRVIDYSVSLLAILGISIPSFILAPLFIQVFAIQFELL
PVASWGTFEHTVLPSFALALGPIAVITRFVRSNMIEVLQSDYIKLARAKGIPIKKIIIRHALRNAIVPVLTFVGPLMAGL
LTGTFVIEKIFSIPGLGKYFVDSIFNRDYPVIMGTTIFYSALLILCIFITDIIHRIVDPRIRSIT
>Mature_305_residues
MYVIKKLSVMVFTLWVITTVTFLIMHIIPGDPFSSDAKIFPEEVIQNMRAKYHLDEPLWNQYVAYLDGVVHFDFGESVQS
TGQGVSEIITTGFGPSAIIGLQALIISLLVGIAAGTFAALYHGRVIDYSVSLLAILGISIPSFILAPLFIQVFAIQFELL
PVASWGTFEHTVLPSFALALGPIAVITRFVRSNMIEVLQSDYIKLARAKGIPIKKIIIRHALRNAIVPVLTFVGPLMAGL
LTGTFVIEKIFSIPGLGKYFVDSIFNRDYPVIMGTTIFYSALLILCIFITDIIHRIVDPRIRSIT

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane. Is expressed to facilitate adaptation to nutrient deficiency conditions [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=303, Percent_Identity=40.5940594059406, Blast_Score=258, Evalue=3e-70,
Organism=Escherichia coli, GI1787053, Length=304, Percent_Identity=37.171052631579, Blast_Score=213, Evalue=1e-56,
Organism=Escherichia coli, GI1789965, Length=335, Percent_Identity=35.2238805970149, Blast_Score=203, Evalue=1e-53,
Organism=Escherichia coli, GI1789888, Length=307, Percent_Identity=32.8990228013029, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI1787761, Length=317, Percent_Identity=31.5457413249211, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI1788504, Length=357, Percent_Identity=28.8515406162465, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=28.5714285714286, Blast_Score=122, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33719; Mature: 33719

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCCC
>Mature Secondary Structure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HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]