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The map label for this gene is 117920043

Identifier: 117920043

GI number: 117920043

Start: 1871397

End: 1874243

Strand: Direct

Name: 117920043

Synonym: Shewana3_1595

Alternate gene names: NA

Gene position: 1871397-1874243 (Clockwise)

Preceding gene: 117920042

Following gene: 117920044

Centisome position: 37.64

GC content: 50.76

Gene sequence:

>2847_bases
ATGTTTAATAACAAAACGCTGTTGGCGTTAGCCATCAGTGGCGTGTGTGGGTTTGCCCATGCTGCCGATAATCTGATTAT
TACTGAATATGTTGAAGGCAGCAGCAACAACAAAGCCATTGAGTTATACAACCCAACCGCCAGCAGCATCGATTTAAGCC
AGTATCAATTGCGCTTCTATTTTAATGGTAGCACAACGGTGGGCACGACTATCGCCCTGACCGGCACCTTAGCCGCAGGG
GCGACTCATGTGGTTGCTGATAATGATGCATCGGCCGATATTCTGGCGGTGACGAATCAACAAAGCAGCGCGAGTTTTTT
CAATGGTGACGATGCCATTGTGCTGACCTATCAAGACCAAGTGATTGATAGCTTAGGCCAAGTGGGCGTAGATCCCGGCA
GTGAGTGGGGCAGTGGTGATTTATCGACGCAGGACAATACCCTGCGCCGCAATCCCGAACAGCTAATCGCCGATACCATT
ATTGATGATGTTGTCACCTTTAATACATGGTTAGGTTTTGCCAAAGACGATATCTCGGATCTGGGCAAATTCAGCGCAGG
CACCCCCACCGATCCTGTTGAGCCGCCACCGAGTTCACTAGCCTGTGGTGAAGCCTCAACGCCTATCCATGCCCTGCAAG
GTTCGACCAATGTCAGTCCGTTAAACGGACAAACCTTAGTGGTAGAAGCCATTGTGGTGAGTAACCAAGAAGCTGGCCTC
AAGGGCATCTTCGTGCAAATGGCCGATAACGAAGCCGATAACGATCCACAAACCTCGGAAGGGGTGTTTGTTTATACCGG
TAATGCGCCAACGGGTTATGTGGCGGGCGACCGTGTACGCTTAAAAGCTAAAGTCACTGAATATCAAGGCTTAACGGAAC
TGACTACCGTTGCCGATCATAAACTGTGCGCCGCAGGTCAGACCCTACCGACAGCCGCCGTGGTGACCTTACCTGTGAAT
TCGAGCGATGACTTTGAACCCTTTGAAGGCATGCGCGTCCGCTTTAGCCAAGACCTGGTGGTGAACGAAGTCTACAACTT
GGGCCGCTATGGTGAAATTTCACTCGGTAGCAGCCGTCACTTTATTGGGACGCAAGTGGCCGCGCCAGGCACAGATGCCT
TAGCCGTCACTGCTGCCAATCTCAAAGACAGTATTTTACTCGACGATGGCTTAACGGCGCAGAACCCTGATCCTGTGATT
TTCCCGGCGCCAGGTTTAAGCGCTTCAAACACTGTGCGTGTGGGCGATAAAGCAACGAGTCTGACGGGCGTTATGCACTA
TGGCTTTAATCTTTATCGCATTATGCCGACTGAGCCAGTTAATTTTGTGGCAGAAAACCCTCGTCCACAATCGCCAGTGC
TTGCCGAAGGCGGCAACCTGAAAGTCGCTAGCTTTAACGTACTGAACTACTTTAATGGCGATGGACAGGGCAGCGGTTTC
CCTACTGCGCGCGGTGCCAATACCCTGAGTGAGTTTGAGCGTCAAAAAGCGAAGATTGTCAGCGCCATGGTAGGGACCAG
TGCCGATGTGTTTGGTCTGATGGAAATCGAGAACGATGGCTTTGGCGCCAACTCGGCGATTGCCGATCTCGTGGCGGGCC
TCAATGCCGCCGTGGGTGAAAATCGCTATGCCTATGTTATTCCAAAGGTCAATGGTAGCAACTTAAGTGCGATCGGTACG
GATGCGATTACCGTCGGTCTCATCTATCGCAGTGACAAAGTGAGCCCTCAGGGTGACGCGCGTATTTTATCCAGCGCGAA
CTCTCCCTTAGATGACGCCGGGCAGCCACTATTCGACGACAGCAAAAACCGCCCTATGTTGACTCAAGCCTTCGTGCTAA
ACGGCAGTGAGGAGAGTGTAGTCGTTGCGGTTAATCACTTGAAATCTAAGGGTAGTGAGTGTGCTGGCGATCCAGATATG
AACGATGGTCAAGGTAACTGCAATATTACCCGTACCCGCGCAGCAACGGCGGCGGGGCAGTGGATTGCAGAGCAGTATCC
AGAGCAAGGCGTACTGCTGATCGGCGACTTAAACTCCTATGCCAAGGAAGATCCGCTAAGCGCATTGGCTAACGCTGGCT
TTAGCGAGTTGTTTGCAAAACTTGAAAAAGCCAATCCTTATTCCTATGTATTCTCGGGTGAATCTGGGCAGTTAGACCAT
GCGCTGGCCAATACCGCGTTAGTGGATAAAGTCGTGGATGTGACCGAGTGGCATATCAATACCGACGAGCCACGGGTGTT
AGATTACAACGAAGAGTTTAAGACGGCTGCGCAGGTGCAAGACCTTTATGCCAGTGATGCTTATCGCTCATCGGATCATG
ATCCTGTGGTGATTTCACTCCTGCTCGAAGCGGAAAACGTGGCTCCTGAAGCCAGCTTCACTCAGCTTGTGAATGGTGCG
AGTGTGCAATTGACTTCAACCTCCATTGATAGCGACGGCCAAATTGTTTCTACTGAGTGGGACTTTGGCGATAATAGCCA
AGCCATGGGCGAGTCGGTATCCCACACCTATGCGCAAACTGGTGATTATCTAGTGACGTTAACAGTGACCGATAATGACG
GTTTAAGCCATAGCAGCTCACAAATGGTGTCTGTGGTGGTTGAGAACGTGAAAAAGCCACCCGTGGCGCAAATTCAGCAC
ATCAATTTATGGTTAGTCGATATGTTTATTTCGACCAGCTATGACACTGACGGCGTGATTAAACAGCATAAATGGAAGTT
TGATAACGGTAGCCGTGCAAGTGGTCCTGTTGTGTTTCGCCAAGCACGCCGCGGGCTGCATACGGTCGAGTTAACCGTGA
AAGACAATGATAAATTAACGGATACCACGTCACTGACGTTCCGTTAA

Upstream 100 bases:

>100_bases
TTCCCTATAGTATCGTCAGTTTTCGAGGCTAAGCGCTTCGTGAAATCGTAAGTCTTTAACTTCAATACCAATATAAAAAA
GATACTTATTAGGGGTCATT

Downstream 100 bases:

>100_bases
GCGTTAGCCTCTTTCTTTAAATATCAAAAGCCTGCATTGCAGGCTTTTTTACTTTGATTCACTTACTTCATCACTTACTT
AATGACTATATTAACTGACT

Product: PKD domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 948; Mature: 948

Protein sequence:

>948_residues
MFNNKTLLALAISGVCGFAHAADNLIITEYVEGSSNNKAIELYNPTASSIDLSQYQLRFYFNGSTTVGTTIALTGTLAAG
ATHVVADNDASADILAVTNQQSSASFFNGDDAIVLTYQDQVIDSLGQVGVDPGSEWGSGDLSTQDNTLRRNPEQLIADTI
IDDVVTFNTWLGFAKDDISDLGKFSAGTPTDPVEPPPSSLACGEASTPIHALQGSTNVSPLNGQTLVVEAIVVSNQEAGL
KGIFVQMADNEADNDPQTSEGVFVYTGNAPTGYVAGDRVRLKAKVTEYQGLTELTTVADHKLCAAGQTLPTAAVVTLPVN
SSDDFEPFEGMRVRFSQDLVVNEVYNLGRYGEISLGSSRHFIGTQVAAPGTDALAVTAANLKDSILLDDGLTAQNPDPVI
FPAPGLSASNTVRVGDKATSLTGVMHYGFNLYRIMPTEPVNFVAENPRPQSPVLAEGGNLKVASFNVLNYFNGDGQGSGF
PTARGANTLSEFERQKAKIVSAMVGTSADVFGLMEIENDGFGANSAIADLVAGLNAAVGENRYAYVIPKVNGSNLSAIGT
DAITVGLIYRSDKVSPQGDARILSSANSPLDDAGQPLFDDSKNRPMLTQAFVLNGSEESVVVAVNHLKSKGSECAGDPDM
NDGQGNCNITRTRAATAAGQWIAEQYPEQGVLLIGDLNSYAKEDPLSALANAGFSELFAKLEKANPYSYVFSGESGQLDH
ALANTALVDKVVDVTEWHINTDEPRVLDYNEEFKTAAQVQDLYASDAYRSSDHDPVVISLLLEAENVAPEASFTQLVNGA
SVQLTSTSIDSDGQIVSTEWDFGDNSQAMGESVSHTYAQTGDYLVTLTVTDNDGLSHSSSQMVSVVVENVKKPPVAQIQH
INLWLVDMFISTSYDTDGVIKQHKWKFDNGSRASGPVVFRQARRGLHTVELTVKDNDKLTDTTSLTFR

Sequences:

>Translated_948_residues
MFNNKTLLALAISGVCGFAHAADNLIITEYVEGSSNNKAIELYNPTASSIDLSQYQLRFYFNGSTTVGTTIALTGTLAAG
ATHVVADNDASADILAVTNQQSSASFFNGDDAIVLTYQDQVIDSLGQVGVDPGSEWGSGDLSTQDNTLRRNPEQLIADTI
IDDVVTFNTWLGFAKDDISDLGKFSAGTPTDPVEPPPSSLACGEASTPIHALQGSTNVSPLNGQTLVVEAIVVSNQEAGL
KGIFVQMADNEADNDPQTSEGVFVYTGNAPTGYVAGDRVRLKAKVTEYQGLTELTTVADHKLCAAGQTLPTAAVVTLPVN
SSDDFEPFEGMRVRFSQDLVVNEVYNLGRYGEISLGSSRHFIGTQVAAPGTDALAVTAANLKDSILLDDGLTAQNPDPVI
FPAPGLSASNTVRVGDKATSLTGVMHYGFNLYRIMPTEPVNFVAENPRPQSPVLAEGGNLKVASFNVLNYFNGDGQGSGF
PTARGANTLSEFERQKAKIVSAMVGTSADVFGLMEIENDGFGANSAIADLVAGLNAAVGENRYAYVIPKVNGSNLSAIGT
DAITVGLIYRSDKVSPQGDARILSSANSPLDDAGQPLFDDSKNRPMLTQAFVLNGSEESVVVAVNHLKSKGSECAGDPDM
NDGQGNCNITRTRAATAAGQWIAEQYPEQGVLLIGDLNSYAKEDPLSALANAGFSELFAKLEKANPYSYVFSGESGQLDH
ALANTALVDKVVDVTEWHINTDEPRVLDYNEEFKTAAQVQDLYASDAYRSSDHDPVVISLLLEAENVAPEASFTQLVNGA
SVQLTSTSIDSDGQIVSTEWDFGDNSQAMGESVSHTYAQTGDYLVTLTVTDNDGLSHSSSQMVSVVVENVKKPPVAQIQH
INLWLVDMFISTSYDTDGVIKQHKWKFDNGSRASGPVVFRQARRGLHTVELTVKDNDKLTDTTSLTFR
>Mature_948_residues
MFNNKTLLALAISGVCGFAHAADNLIITEYVEGSSNNKAIELYNPTASSIDLSQYQLRFYFNGSTTVGTTIALTGTLAAG
ATHVVADNDASADILAVTNQQSSASFFNGDDAIVLTYQDQVIDSLGQVGVDPGSEWGSGDLSTQDNTLRRNPEQLIADTI
IDDVVTFNTWLGFAKDDISDLGKFSAGTPTDPVEPPPSSLACGEASTPIHALQGSTNVSPLNGQTLVVEAIVVSNQEAGL
KGIFVQMADNEADNDPQTSEGVFVYTGNAPTGYVAGDRVRLKAKVTEYQGLTELTTVADHKLCAAGQTLPTAAVVTLPVN
SSDDFEPFEGMRVRFSQDLVVNEVYNLGRYGEISLGSSRHFIGTQVAAPGTDALAVTAANLKDSILLDDGLTAQNPDPVI
FPAPGLSASNTVRVGDKATSLTGVMHYGFNLYRIMPTEPVNFVAENPRPQSPVLAEGGNLKVASFNVLNYFNGDGQGSGF
PTARGANTLSEFERQKAKIVSAMVGTSADVFGLMEIENDGFGANSAIADLVAGLNAAVGENRYAYVIPKVNGSNLSAIGT
DAITVGLIYRSDKVSPQGDARILSSANSPLDDAGQPLFDDSKNRPMLTQAFVLNGSEESVVVAVNHLKSKGSECAGDPDM
NDGQGNCNITRTRAATAAGQWIAEQYPEQGVLLIGDLNSYAKEDPLSALANAGFSELFAKLEKANPYSYVFSGESGQLDH
ALANTALVDKVVDVTEWHINTDEPRVLDYNEEFKTAAQVQDLYASDAYRSSDHDPVVISLLLEAENVAPEASFTQLVNGA
SVQLTSTSIDSDGQIVSTEWDFGDNSQAMGESVSHTYAQTGDYLVTLTVTDNDGLSHSSSQMVSVVVENVKKPPVAQIQH
INLWLVDMFISTSYDTDGVIKQHKWKFDNGSRASGPVVFRQARRGLHTVELTVKDNDKLTDTTSLTFR

Specific function: Unknown

COG id: COG2374

COG function: function code R; Predicted extracellular nuclease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 5 PKD domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022409
- InterPro:   IPR000601 [H]

Pfam domain/function: PF00801 PKD [H]

EC number: NA

Molecular weight: Translated: 100846; Mature: 100846

Theoretical pI: Translated: 4.19; Mature: 4.19

Prosite motif: PS50093 PKD ; PS00136 SUBTILASE_ASP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNNKTLLALAISGVCGFAHAADNLIITEYVEGSSNNKAIELYNPTASSIDLSQYQLRFY
CCCCCEEEEEEECCHHHHHHHCCCEEEEEEECCCCCCCEEEEECCCCCCEECEEEEEEEE
FNGSTTVGTTIALTGTLAAGATHVVADNDASADILAVTNQQSSASFFNGDDAIVLTYQDQ
ECCCCCCCEEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEECCCCEEEEEECHH
VIDSLGQVGVDPGSEWGSGDLSTQDNTLRRNPEQLIADTIIDDVVTFNTWLGFAKDDISD
HHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LGKFSAGTPTDPVEPPPSSLACGEASTPIHALQGSTNVSPLNGQTLVVEAIVVSNQEAGL
HHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEECCCCCCC
KGIFVQMADNEADNDPQTSEGVFVYTGNAPTGYVAGDRVRLKAKVTEYQGLTELTTVADH
EEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEEEHHHCCCHHHHHHHCC
KLCAAGQTLPTAAVVTLPVNSSDDFEPFEGMRVRFSQDLVVNEVYNLGRYGEISLGSSRH
HHHHCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCEEEECCCCC
FIGTQVAAPGTDALAVTAANLKDSILLDDGLTAQNPDPVIFPAPGLSASNTVRVGDKATS
EEEEEECCCCCCEEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCCCCEEEECCCHHH
LTGVMHYGFNLYRIMPTEPVNFVAENPRPQSPVLAEGGNLKVASFNVLNYFNGDGQGSGF
HHHHEECCCEEEEEECCCCCCEEECCCCCCCCEEECCCCEEEEEEEEEEEECCCCCCCCC
PTARGANTLSEFERQKAKIVSAMVGTSADVFGLMEIENDGFGANSAIADLVAGLNAAVGE
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHCHHHHCC
NRYAYVIPKVNGSNLSAIGTDAITVGLIYRSDKVSPQGDARILSSANSPLDDAGQPLFDD
CEEEEEEECCCCCCCEEECCCEEEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCC
SKNRPMLTQAFVLNGSEESVVVAVNHLKSKGSECAGDPDMNDGQGNCNITRTRAATAAGQ
CCCCCEEEEEEEECCCCCEEEEEEEHHHCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHH
WIAEQYPEQGVLLIGDLNSYAKEDPLSALANAGFSELFAKLEKANPYSYVFSGESGQLDH
HHHHHCCCCCEEEEECCCHHHHCCHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCHH
ALANTALVDKVVDVTEWHINTDEPRVLDYNEEFKTAAQVQDLYASDAYRSSDHDPVVISL
HHHHHHHHHHHHHHEEEEECCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
LLEAENVAPEASFTQLVNGASVQLTSTSIDSDGQIVSTEWDFGDNSQAMGESVSHTYAQT
EEECCCCCCCCHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCCCHHHCCHHHHHHHCC
GDYLVTLTVTDNDGLSHSSSQMVSVVVENVKKPPVAQIQHINLWLVDMFISTSYDTDGVI
CCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHEEEEEEEEEEEEEECCCCCCCCC
KQHKWKFDNGSRASGPVVFRQARRGLHTVELTVKDNDKLTDTTSLTFR
CCCEEECCCCCCCCCCHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEC
>Mature Secondary Structure
MFNNKTLLALAISGVCGFAHAADNLIITEYVEGSSNNKAIELYNPTASSIDLSQYQLRFY
CCCCCEEEEEEECCHHHHHHHCCCEEEEEEECCCCCCCEEEEECCCCCCEECEEEEEEEE
FNGSTTVGTTIALTGTLAAGATHVVADNDASADILAVTNQQSSASFFNGDDAIVLTYQDQ
ECCCCCCCEEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEECCCCEEEEEECHH
VIDSLGQVGVDPGSEWGSGDLSTQDNTLRRNPEQLIADTIIDDVVTFNTWLGFAKDDISD
HHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LGKFSAGTPTDPVEPPPSSLACGEASTPIHALQGSTNVSPLNGQTLVVEAIVVSNQEAGL
HHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEECCCCCCC
KGIFVQMADNEADNDPQTSEGVFVYTGNAPTGYVAGDRVRLKAKVTEYQGLTELTTVADH
EEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEEEHHHCCCHHHHHHHCC
KLCAAGQTLPTAAVVTLPVNSSDDFEPFEGMRVRFSQDLVVNEVYNLGRYGEISLGSSRH
HHHHCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCEEEECCCCC
FIGTQVAAPGTDALAVTAANLKDSILLDDGLTAQNPDPVIFPAPGLSASNTVRVGDKATS
EEEEEECCCCCCEEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCCCCEEEECCCHHH
LTGVMHYGFNLYRIMPTEPVNFVAENPRPQSPVLAEGGNLKVASFNVLNYFNGDGQGSGF
HHHHEECCCEEEEEECCCCCCEEECCCCCCCCEEECCCCEEEEEEEEEEEECCCCCCCCC
PTARGANTLSEFERQKAKIVSAMVGTSADVFGLMEIENDGFGANSAIADLVAGLNAAVGE
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHCHHHHCC
NRYAYVIPKVNGSNLSAIGTDAITVGLIYRSDKVSPQGDARILSSANSPLDDAGQPLFDD
CEEEEEEECCCCCCCEEECCCEEEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCC
SKNRPMLTQAFVLNGSEESVVVAVNHLKSKGSECAGDPDMNDGQGNCNITRTRAATAAGQ
CCCCCEEEEEEEECCCCCEEEEEEEHHHCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHH
WIAEQYPEQGVLLIGDLNSYAKEDPLSALANAGFSELFAKLEKANPYSYVFSGESGQLDH
HHHHHCCCCCEEEEECCCHHHHCCHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCHH
ALANTALVDKVVDVTEWHINTDEPRVLDYNEEFKTAAQVQDLYASDAYRSSDHDPVVISL
HHHHHHHHHHHHHHEEEEECCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
LLEAENVAPEASFTQLVNGASVQLTSTSIDSDGQIVSTEWDFGDNSQAMGESVSHTYAQT
EEECCCCCCCCHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCCCHHHCCHHHHHHHCC
GDYLVTLTVTDNDGLSHSSSQMVSVVVENVKKPPVAQIQHINLWLVDMFISTSYDTDGVI
CCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHEEEEEEEEEEEEEECCCCCCCCC
KQHKWKFDNGSRASGPVVFRQARRGLHTVELTVKDNDKLTDTTSLTFR
CCCEEECCCCCCCCCCHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]