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The map label for this gene is sohB [H]

Identifier: 117919978

GI number: 117919978

Start: 1781664

End: 1782680

Strand: Direct

Name: sohB [H]

Synonym: Shewana3_1530

Alternate gene names: 117919978

Gene position: 1781664-1782680 (Clockwise)

Preceding gene: 117919977

Following gene: 117919979

Centisome position: 35.83

GC content: 47.0

Gene sequence:

>1017_bases
TTGGAATTTCTATACGAATATGGCATGTTTTTAGCGAAAGCCGTGACGATTGTGGTTGCGCTTGTAGCTGTGATTATTGT
GGTGCTCGCGTCCACGGTGAAGCACAAATCGGATAAAGGTGAACTGAGGATCACCAACCTTTCAGAAGAACTGGAAGAGC
TTAAACACAGCTTGAAGGAAGAACTGCTGTCGAAGAAGCAGTTTAAAGCCTACGAAAAACAGCTGAAAGCAGACGAAAAA
GCAAAGGAAAAAACGGCCGAAGAAGACAGCAAAGGCAAAGTTTTTGTTATTGATTTTAAAGGCAGTATTGATGCCGCCGA
AGTGGCTTCTCTGCGGGAAGAAATCAGCGCGATTTTAACCATCGCCGAAAAGGGCGATGAAGTGGTGGTGAATGTCGAAA
GTGGTGGAGGCATGGTACATGGCTACGGTTTAGCCTCTAGCCAGCTTGACCGCCTGCGTCAGGCAGAGATCCCATTAACG
ATTTGCGTGGATAAGGTCGCTGCCAGCGGTGGTTATATGATGGCCTGTGTGGCAAACAAAGTGTATGCCGCGCCATTCGC
CATCGTAGGCTCAATCGGTGTCGTTGCCCAGTTGCCTAACTTCAACCGTTTATTGAAGAAACATGAAATCGACTACGAGC
AACATACGGCCGGTGATTTTAAACGCACCTTAACCGTTTTTGGCGAGAATACTGACGAAGGCAGACAGAAGTTCCAACAG
GAGCTGGAAGAAACCCATGTATTGTTTAAAGCTTTCGTGAGCAAATATCGTCCTCAGCTCGACTTGGCAAAGGTGGCCAC
GGGTGAACATTGGTACGGTCAACAGGCGATTGAATTAGGCCTTATCGATGCGATTTCAACCAGTGATGATGTGTTAATGC
AGTTAGCTGGCGAACGTACCGTCTACAAGTTGCGCTATCAAGTCCGTAAGAAGTTGGCCGACAAAATCGCCCATGGTGCG
TCCTTATCGGTCAATGCGATTTTTAATCGCTTAGTTGAGAAAAATCGTCCCATGTAA

Upstream 100 bases:

>100_bases
TCCTAAAAACCCAGCCTTTGCTGGGTTTTTTTATGGCGCTTTAGGCTGTTAGAATAGCGCGCACTAAACCGGATCACCTT
AGGCCCCAACGGAGAGTACT

Downstream 100 bases:

>100_bases
GCCGACGAGCTAACTCAATCCTGATGAAAACGCCTGCGAAAATGCAGGCGTTTTTGTTTTGTCCGGGTGCGAAATAAAAT
AATACATTTTTTTAACATTA

Product: putative periplasmic protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MEFLYEYGMFLAKAVTIVVALVAVIIVVLASTVKHKSDKGELRITNLSEELEELKHSLKEELLSKKQFKAYEKQLKADEK
AKEKTAEEDSKGKVFVIDFKGSIDAAEVASLREEISAILTIAEKGDEVVVNVESGGGMVHGYGLASSQLDRLRQAEIPLT
ICVDKVAASGGYMMACVANKVYAAPFAIVGSIGVVAQLPNFNRLLKKHEIDYEQHTAGDFKRTLTVFGENTDEGRQKFQQ
ELEETHVLFKAFVSKYRPQLDLAKVATGEHWYGQQAIELGLIDAISTSDDVLMQLAGERTVYKLRYQVRKKLADKIAHGA
SLSVNAIFNRLVEKNRPM

Sequences:

>Translated_338_residues
MEFLYEYGMFLAKAVTIVVALVAVIIVVLASTVKHKSDKGELRITNLSEELEELKHSLKEELLSKKQFKAYEKQLKADEK
AKEKTAEEDSKGKVFVIDFKGSIDAAEVASLREEISAILTIAEKGDEVVVNVESGGGMVHGYGLASSQLDRLRQAEIPLT
ICVDKVAASGGYMMACVANKVYAAPFAIVGSIGVVAQLPNFNRLLKKHEIDYEQHTAGDFKRTLTVFGENTDEGRQKFQQ
ELEETHVLFKAFVSKYRPQLDLAKVATGEHWYGQQAIELGLIDAISTSDDVLMQLAGERTVYKLRYQVRKKLADKIAHGA
SLSVNAIFNRLVEKNRPM
>Mature_338_residues
MEFLYEYGMFLAKAVTIVVALVAVIIVVLASTVKHKSDKGELRITNLSEELEELKHSLKEELLSKKQFKAYEKQLKADEK
AKEKTAEEDSKGKVFVIDFKGSIDAAEVASLREEISAILTIAEKGDEVVVNVESGGGMVHGYGLASSQLDRLRQAEIPLT
ICVDKVAASGGYMMACVANKVYAAPFAIVGSIGVVAQLPNFNRLLKKHEIDYEQHTAGDFKRTLTVFGENTDEGRQKFQQ
ELEETHVLFKAFVSKYRPQLDLAKVATGEHWYGQQAIELGLIDAISTSDDVLMQLAGERTVYKLRYQVRKKLADKIAHGA
SLSVNAIFNRLVEKNRPM

Specific function: Multicopy suppressor of the htrA (degP) null phenotype. It is possibly a protease, not essential for bacterial viability [H]

COG id: COG0616

COG function: function code OU; Periplasmic serine proteases (ClpP class)

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S49 family [H]

Homologues:

Organism=Escherichia coli, GI1787527, Length=348, Percent_Identity=54.3103448275862, Blast_Score=362, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002142
- InterPro:   IPR013703 [H]

Pfam domain/function: PF01343 Peptidase_S49; PF08496 Peptidase_S49_N [H]

EC number: 3.4.21.-

Molecular weight: Translated: 37529; Mature: 37529

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFLYEYGMFLAKAVTIVVALVAVIIVVLASTVKHKSDKGELRITNLSEELEELKHSLKE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHH
ELLSKKQFKAYEKQLKADEKAKEKTAEEDSKGKVFVIDFKGSIDAAEVASLREEISAILT
HHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
IAEKGDEVVVNVESGGGMVHGYGLASSQLDRLRQAEIPLTICVDKVAASGGYMMACVANK
HHCCCCEEEEEEECCCCEEEECCCCHHHHHHHHHHCCCHHEEHHHHHCCCCEEEEHHHHH
VYAAPFAIVGSIGVVAQLPNFNRLLKKHEIDYEQHTAGDFKRTLTVFGENTDEGRQKFQQ
HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHCCHHHHHHHHEECCCCHHHHHHHHH
ELEETHVLFKAFVSKYRPQLDLAKVATGEHWYGQQAIELGLIDAISTSDDVLMQLAGERT
HHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCHH
VYKLRYQVRKKLADKIAHGASLSVNAIFNRLVEKNRPM
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEFLYEYGMFLAKAVTIVVALVAVIIVVLASTVKHKSDKGELRITNLSEELEELKHSLKE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHH
ELLSKKQFKAYEKQLKADEKAKEKTAEEDSKGKVFVIDFKGSIDAAEVASLREEISAILT
HHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
IAEKGDEVVVNVESGGGMVHGYGLASSQLDRLRQAEIPLTICVDKVAASGGYMMACVANK
HHCCCCEEEEEEECCCCEEEECCCCHHHHHHHHHHCCCHHEEHHHHHCCCCEEEEHHHHH
VYAAPFAIVGSIGVVAQLPNFNRLLKKHEIDYEQHTAGDFKRTLTVFGENTDEGRQKFQQ
HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHCCHHHHHHHHEECCCCHHHHHHHHH
ELEETHVLFKAFVSKYRPQLDLAKVATGEHWYGQQAIELGLIDAISTSDDVLMQLAGERT
HHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCHH
VYKLRYQVRKKLADKIAHGASLSVNAIFNRLVEKNRPM
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1885549; 9097039; 9278503; 3029379 [H]