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The map label for this gene is yciO [H]

Identifier: 117919970

GI number: 117919970

Start: 1773237

End: 1773857

Strand: Direct

Name: yciO [H]

Synonym: Shewana3_1522

Alternate gene names: 117919970

Gene position: 1773237-1773857 (Clockwise)

Preceding gene: 117919969

Following gene: 117919971

Centisome position: 35.66

GC content: 47.67

Gene sequence:

>621_bases
ATGAGTCAGTTTTTTTATGTACACGAAGTAAATCCACAGGTACGCCTGATCAGTCAAGCAGTGGCTGTGCTTAAGTCCGG
CGGTGTGATTGTATATCCAACCGATTCGGGCTATGCCCTCGGTTGTATGATTGGCGAGAAAGACGCGATGACGCGCATTA
CCCGCATTCGTCAAATCGAGCATGACCATAATTTCTCGTTAATGTGCCGCGACTTATCCGAGTTAGCGACCTATGCCAAG
GTGGATAATCAGGCCTACCGCATCTTAAAAAGCTGCACGCCTGGACCTTACACTTTCATCTTTAAGGCGAGCAAGGAAGT
ACCCCGTCGTCTGCAAAATGACAAGAAGAAAACCATAGGTATCCGCGTGCCTGATAATATTATTGCCTTAGCTCTGCTCG
AAGCGTTAGATGCGCCGCTGATGTCGACCAGTTTGGTGATGCCAAATAGTGATTTTGCTGAATCTGATCCTGAGCACATT
CGCGATCTGTTAGAACATCAAGTGGATGTGATTATTCACGGCGGTTATTTAGGTGAAAAACCGACCACGGTCATTGATAT
GTCGGAAGATGGTTTCGAAGTGCTGCGTGAAGGCGCGGGTGATGTGACCCCCTTTCTCTAA

Upstream 100 bases:

>100_bases
ATTTTCACTTTCCAAGCAATTGGATTGAACTAGGTAAAAATCTCTACCAGCCTCAAGGTATTGATTGGGTCTGGCAGTCG
GGATCTTGGGTGGAACGACC

Downstream 100 bases:

>100_bases
CCGCGATTTATCCTAAGAGATTGAGGCGATAAAACCATCATTTGACAGTGTTATCGCCGCTCAATTGCGGGTATAATCGC
GCGTTTGGCGTAGGGGCGCT

Product: translation factor SUA5

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MSQFFYVHEVNPQVRLISQAVAVLKSGGVIVYPTDSGYALGCMIGEKDAMTRITRIRQIEHDHNFSLMCRDLSELATYAK
VDNQAYRILKSCTPGPYTFIFKASKEVPRRLQNDKKKTIGIRVPDNIIALALLEALDAPLMSTSLVMPNSDFAESDPEHI
RDLLEHQVDVIIHGGYLGEKPTTVIDMSEDGFEVLREGAGDVTPFL

Sequences:

>Translated_206_residues
MSQFFYVHEVNPQVRLISQAVAVLKSGGVIVYPTDSGYALGCMIGEKDAMTRITRIRQIEHDHNFSLMCRDLSELATYAK
VDNQAYRILKSCTPGPYTFIFKASKEVPRRLQNDKKKTIGIRVPDNIIALALLEALDAPLMSTSLVMPNSDFAESDPEHI
RDLLEHQVDVIIHGGYLGEKPTTVIDMSEDGFEVLREGAGDVTPFL
>Mature_205_residues
SQFFYVHEVNPQVRLISQAVAVLKSGGVIVYPTDSGYALGCMIGEKDAMTRITRIRQIEHDHNFSLMCRDLSELATYAKV
DNQAYRILKSCTPGPYTFIFKASKEVPRRLQNDKKKTIGIRVPDNIIALALLEALDAPLMSTSLVMPNSDFAESDPEHIR
DLLEHQVDVIIHGGYLGEKPTTVIDMSEDGFEVLREGAGDVTPFL

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=206, Percent_Identity=67.9611650485437, Blast_Score=297, Evalue=3e-82,
Organism=Escherichia coli, GI2367210, Length=138, Percent_Identity=32.6086956521739, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22971; Mature: 22839

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFFYVHEVNPQVRLISQAVAVLKSGGVIVYPTDSGYALGCMIGEKDAMTRITRIRQIE
CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCHHHHHHHHHHHHHH
HDHNFSLMCRDLSELATYAKVDNQAYRILKSCTPGPYTFIFKASKEVPRRLQNDKKKTIG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHCCCHHEEE
IRVPDNIIALALLEALDAPLMSTSLVMPNSDFAESDPEHIRDLLEHQVDVIIHGGYLGEK
EECCHHHHHHHHHHHHCCCHHHCEEECCCCCCCCCCHHHHHHHHHCCEEEEEECCCCCCC
PTTVIDMSEDGFEVLREGAGDVTPFL
CCEEEEECCCHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SQFFYVHEVNPQVRLISQAVAVLKSGGVIVYPTDSGYALGCMIGEKDAMTRITRIRQIE
CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCHHHHHHHHHHHHHH
HDHNFSLMCRDLSELATYAKVDNQAYRILKSCTPGPYTFIFKASKEVPRRLQNDKKKTIG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHCCCHHEEE
IRVPDNIIALALLEALDAPLMSTSLVMPNSDFAESDPEHIRDLLEHQVDVIIHGGYLGEK
EECCHHHHHHHHHHHHCCCHHHCEEECCCCCCCCCCHHHHHHHHHCCEEEEEECCCCCCC
PTTVIDMSEDGFEVLREGAGDVTPFL
CCEEEEECCCHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]