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The map label for this gene is scpA [H]

Identifier: 117919971

GI number: 117919971

Start: 1774047

End: 1774835

Strand: Direct

Name: scpA [H]

Synonym: Shewana3_1523

Alternate gene names: 117919971

Gene position: 1774047-1774835 (Clockwise)

Preceding gene: 117919970

Following gene: 117919972

Centisome position: 35.68

GC content: 47.66

Gene sequence:

>789_bases
ATGCAGGGCACGCAACAAAGTTTACCCTTAGCCGTTGTTCGCGGTCAGGCGATGACCGAAATGCCACAGGATTTATTTAT
TCCACCTGAGGCGTTAGAAGTGTTCTTGGAGTCCTTCGAAGGGCCGCTCGACTTACTTTTGTATTTGATCCGTAAGCAAA
AATTAGATGTTGTCGATTTACCCATTTCGCAGATCACCGCGCAATATCTAGAATATATCGCGATGCTTACTCAGGCGCGT
ATCGAATTGGCCTCGGATTATTTGGTCATGGCGGCAACACTGGCTGAGATTAAATCCCGGCTGCTGCTGCCGCGTATGGT
GGCGGAAGATGAAGTGGAGGAAGATCCACGGGCCCAGTTGATCCGTCAATTGAAGGCCTATGAGGTGATCAAAGAAGCCT
CGCAAAAAATTGATGATTTACCTCGGCTTGAACGCGATGTGTTTCAAGCAACCGCGGCACCTTCACCGAATATCAAACCT
TTGGTGATCCCGCCAGATGTATCGTTATTTGAAATCGCCCGCGCCTTTGGCGAGGTGCTTAGACGTATCGATGCCAATGA
AGATCATCATGTTAAGCGTGAACAGTTATCGACCCGCGAGCGTATGAGCCAAATTTTAGCCATGCTTAATAGCGAGACGT
TTACGCCCTTTGAGCGTTTATTTAGCGTCGAAGAAGGCCGAGCCGGTGTGGTGGTGACCTTTTTAGCGCTGATGGAATTG
GTCAAAGAACTATTAGTGGAATTGTACCAAACAGAGCCGTTTTCAACTATTTACGTAAAGGCCTATTAA

Upstream 100 bases:

>100_bases
GTAGGGGCGCTTGCATAGCGAGCTTATGCCGCGCTCAGTACAGGTTCGAGTCAGTCATCTACAACCGTTTAAAAACGATT
GTTTTACATGGGGATAGCGG

Downstream 100 bases:

>100_bases
TTGATGCAGATAAATCCAATTCAATTAAAACAGCTTATTGAAGCGAGTCTGTTTGTATTGGGGAAACCCTTGTCGGTGAA
AATGTTGAAAGAAACCGTGT

Product: condensin subunit ScpA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MQGTQQSLPLAVVRGQAMTEMPQDLFIPPEALEVFLESFEGPLDLLLYLIRKQKLDVVDLPISQITAQYLEYIAMLTQAR
IELASDYLVMAATLAEIKSRLLLPRMVAEDEVEEDPRAQLIRQLKAYEVIKEASQKIDDLPRLERDVFQATAAPSPNIKP
LVIPPDVSLFEIARAFGEVLRRIDANEDHHVKREQLSTRERMSQILAMLNSETFTPFERLFSVEEGRAGVVVTFLALMEL
VKELLVELYQTEPFSTIYVKAY

Sequences:

>Translated_262_residues
MQGTQQSLPLAVVRGQAMTEMPQDLFIPPEALEVFLESFEGPLDLLLYLIRKQKLDVVDLPISQITAQYLEYIAMLTQAR
IELASDYLVMAATLAEIKSRLLLPRMVAEDEVEEDPRAQLIRQLKAYEVIKEASQKIDDLPRLERDVFQATAAPSPNIKP
LVIPPDVSLFEIARAFGEVLRRIDANEDHHVKREQLSTRERMSQILAMLNSETFTPFERLFSVEEGRAGVVVTFLALMEL
VKELLVELYQTEPFSTIYVKAY
>Mature_262_residues
MQGTQQSLPLAVVRGQAMTEMPQDLFIPPEALEVFLESFEGPLDLLLYLIRKQKLDVVDLPISQITAQYLEYIAMLTQAR
IELASDYLVMAATLAEIKSRLLLPRMVAEDEVEEDPRAQLIRQLKAYEVIKEASQKIDDLPRLERDVFQATAAPSPNIKP
LVIPPDVSLFEIARAFGEVLRRIDANEDHHVKREQLSTRERMSQILAMLNSETFTPFERLFSVEEGRAGVVVTFLALMEL
VKELLVELYQTEPFSTIYVKAY

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpB that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1354

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003768 [H]

Pfam domain/function: PF02616 ScpA_ScpB [H]

EC number: NA

Molecular weight: Translated: 29865; Mature: 29865

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGTQQSLPLAVVRGQAMTEMPQDLFIPPEALEVFLESFEGPLDLLLYLIRKQKLDVVDL
CCCCCHHCCHHHHCCCHHHHCCHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC
PISQITAQYLEYIAMLTQARIELASDYLVMAATLAEIKSRLLLPRMVAEDEVEEDPRAQL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
IRQLKAYEVIKEASQKIDDLPRLERDVFQATAAPSPNIKPLVIPPDVSLFEIARAFGEVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHH
RRIDANEDHHVKREQLSTRERMSQILAMLNSETFTPFERLFSVEEGRAGVVVTFLALMEL
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
VKELLVELYQTEPFSTIYVKAY
HHHHHHHHHHCCCCCEEEEEEC
>Mature Secondary Structure
MQGTQQSLPLAVVRGQAMTEMPQDLFIPPEALEVFLESFEGPLDLLLYLIRKQKLDVVDL
CCCCCHHCCHHHHCCCHHHHCCHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC
PISQITAQYLEYIAMLTQARIELASDYLVMAATLAEIKSRLLLPRMVAEDEVEEDPRAQL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
IRQLKAYEVIKEASQKIDDLPRLERDVFQATAAPSPNIKPLVIPPDVSLFEIARAFGEVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHH
RRIDANEDHHVKREQLSTRERMSQILAMLNSETFTPFERLFSVEEGRAGVVVTFLALMEL
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
VKELLVELYQTEPFSTIYVKAY
HHHHHHHHHHCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]