Click here to switch to the map view.

The map label for this gene is 117919662

Identifier: 117919662

GI number: 117919662

Start: 1417962

End: 1419455

Strand: Reverse

Name: 117919662

Synonym: Shewana3_1213

Alternate gene names: NA

Gene position: 1419455-1417962 (Counterclockwise)

Preceding gene: 117919663

Following gene: 117919661

Centisome position: 28.55

GC content: 47.39

Gene sequence:

>1494_bases
ATGCTATTTATTAGCATGTTAACCCTTGTATCTGAGGAGTCATTCTTGTTTAGACCTTTATCGCTCCTATTTATTGGACT
TGGATTAACGCTAACAAAACCCTCTTTAGCGGAATTTTCCTTGGCTCAAATTCCCCCGCTATCGAATAAAACCCCCATCA
CCTTAGTCGCCGAAAAAGGCTTTTGGACCGACTATCTGACCCGCGAAATGCTGCCTAAATTCACCGAAAAAACCGGTGTC
AAAGTCAATGTGGTTAGCACCGAGCTTGAGAGCATGTTTGAGCTTCAGACCCAAGCGTTGCTGCAAGGTGAAGGTAAGTA
CGATTTGCTCACTATGGAGGCGGGTTGGGCCAAAGAGTGGGCTGCCAATGGCTATACCGTGCCGCTACCAGAATTAGCCA
AACTATACGATCCCGATGGCGAAAAAGCGATGGAAAGGTATCTCGAACCTTACTATCCATCACTTCTTAACATTTTGTCT
TATCACGGCGAGTTACACGCCATCCCCTACAATAACTATGTGATGGGCAGCCACTACCGTGCCGATCTGTTTGAAAATAA
GACCGAGCAAACCCACTTTCAGCAACGTTTCGGTTATCCACTCAAACCTGCGACCAATTTTGATGAACTGCAGGATCAAG
CGGTATTTTTTACTCGAAAGAGCGGTGAACTCCTCGCCGATAAACAGCTAAGCCACAACTTTTATGGTCTTGCCTTAATG
TCAGGCAATAAGCCCCATATTAACGATGAGTTTTCTAGCATTATCTGGAGCTTAGGTGGTGCTTGGATGTGGCCCATCTA
TAATCAACAAAAACAGTTGACGCATTTTGAGGTGCCCGCTGTCAATCAAGAGGCGCTAAAAGCGGCCATTATTTACCGTA
AGCTGATGCCCTACGCTATCCCTGCGGATGACAAATTTGCCTTTAACGAAGCGGCCAATGCAATGGCTTCAGGGCAAGTG
GCTATTTGGCCTTTTGCTTACAACAATCTATGGTCGGCCTCCTTTAAAGTCGAGGCCAATGTGCCGGGTGCTCGACTTGG
CGTAGCTCAAGTGCCAGGCGGTACCCCCTATAACGGCGCCTACGCCTTTGCAGTGAGCTACGACAGTAAAAATCCGCAAG
CCGCCTATTGGTTACTTAAATACATGGGCACCTATGAAGCCCAATACGCCTATGCCCTCGGTGGCGGCAATCCCTGCAGA
ATGGACGTAGTAACGGCGCCCGAATTTAACCAAGCCTCAAAAAGAGCCATTGCTGGCGCATTCGAGGCGAGCCATATCGC
AAATTTATTTTGGTCAACTAAAGTCTTGGATGTCGGGCACTTTACCACGACCGCCATGGGACAAATTTACCCAGAATTAA
GCCATGCGTGTTACGCCGCAAGCCGGCATGAAGCGGACAGCGCCGATATTTTTATTGAATTGAGTGCCAAAATTAAGCAT
CTGCAGAATACCTATGGGGAAGTGCCTGCAATTGATAAGAACAATAGCCAATGA

Upstream 100 bases:

>100_bases
ATTGATTAGGTCACCGGTTTTTTTTGCCTCAAAAAAACCTTACAAAAATTAAGTTATAATTTGTATCAAGCCTATCCTTA
ATGTACAGCTAAGTTTATTA

Downstream 100 bases:

>100_bases
ATGCTAAACGACTCACAAGTCTAAAACATAAAATTACGCTGGCCTTTTATATCATTCTGGGCATGGCGTTGCTTAATGGC
GTTATCGCTATCCTATTGTC

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: ABC-Type Sugar Transport System Periplasmic Component

Number of amino acids: Translated: 497; Mature: 497

Protein sequence:

>497_residues
MLFISMLTLVSEESFLFRPLSLLFIGLGLTLTKPSLAEFSLAQIPPLSNKTPITLVAEKGFWTDYLTREMLPKFTEKTGV
KVNVVSTELESMFELQTQALLQGEGKYDLLTMEAGWAKEWAANGYTVPLPELAKLYDPDGEKAMERYLEPYYPSLLNILS
YHGELHAIPYNNYVMGSHYRADLFENKTEQTHFQQRFGYPLKPATNFDELQDQAVFFTRKSGELLADKQLSHNFYGLALM
SGNKPHINDEFSSIIWSLGGAWMWPIYNQQKQLTHFEVPAVNQEALKAAIIYRKLMPYAIPADDKFAFNEAANAMASGQV
AIWPFAYNNLWSASFKVEANVPGARLGVAQVPGGTPYNGAYAFAVSYDSKNPQAAYWLLKYMGTYEAQYAYALGGGNPCR
MDVVTAPEFNQASKRAIAGAFEASHIANLFWSTKVLDVGHFTTTAMGQIYPELSHACYAASRHEADSADIFIELSAKIKH
LQNTYGEVPAIDKNNSQ

Sequences:

>Translated_497_residues
MLFISMLTLVSEESFLFRPLSLLFIGLGLTLTKPSLAEFSLAQIPPLSNKTPITLVAEKGFWTDYLTREMLPKFTEKTGV
KVNVVSTELESMFELQTQALLQGEGKYDLLTMEAGWAKEWAANGYTVPLPELAKLYDPDGEKAMERYLEPYYPSLLNILS
YHGELHAIPYNNYVMGSHYRADLFENKTEQTHFQQRFGYPLKPATNFDELQDQAVFFTRKSGELLADKQLSHNFYGLALM
SGNKPHINDEFSSIIWSLGGAWMWPIYNQQKQLTHFEVPAVNQEALKAAIIYRKLMPYAIPADDKFAFNEAANAMASGQV
AIWPFAYNNLWSASFKVEANVPGARLGVAQVPGGTPYNGAYAFAVSYDSKNPQAAYWLLKYMGTYEAQYAYALGGGNPCR
MDVVTAPEFNQASKRAIAGAFEASHIANLFWSTKVLDVGHFTTTAMGQIYPELSHACYAASRHEADSADIFIELSAKIKH
LQNTYGEVPAIDKNNSQ
>Mature_497_residues
MLFISMLTLVSEESFLFRPLSLLFIGLGLTLTKPSLAEFSLAQIPPLSNKTPITLVAEKGFWTDYLTREMLPKFTEKTGV
KVNVVSTELESMFELQTQALLQGEGKYDLLTMEAGWAKEWAANGYTVPLPELAKLYDPDGEKAMERYLEPYYPSLLNILS
YHGELHAIPYNNYVMGSHYRADLFENKTEQTHFQQRFGYPLKPATNFDELQDQAVFFTRKSGELLADKQLSHNFYGLALM
SGNKPHINDEFSSIIWSLGGAWMWPIYNQQKQLTHFEVPAVNQEALKAAIIYRKLMPYAIPADDKFAFNEAANAMASGQV
AIWPFAYNNLWSASFKVEANVPGARLGVAQVPGGTPYNGAYAFAVSYDSKNPQAAYWLLKYMGTYEAQYAYALGGGNPCR
MDVVTAPEFNQASKRAIAGAFEASHIANLFWSTKVLDVGHFTTTAMGQIYPELSHACYAASRHEADSADIFIELSAKIKH
LQNTYGEVPAIDKNNSQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55603; Mature: 55603

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFISMLTLVSEESFLFRPLSLLFIGLGLTLTKPSLAEFSLAQIPPLSNKTPITLVAEKG
CHHHHHHHHHCCCCHHHHHHHHHHHHCCCEECCCCHHHCHHHHCCCCCCCCCEEEEECCC
FWTDYLTREMLPKFTEKTGVKVNVVSTELESMFELQTQALLQGEGKYDLLTMEAGWAKEW
CCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH
AANGYTVPLPELAKLYDPDGEKAMERYLEPYYPSLLNILSYHGELHAIPYNNYVMGSHYR
CCCCCEECCHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCEEEECCCCEEECCCCC
ADLFENKTEQTHFQQRFGYPLKPATNFDELQDQAVFFTRKSGELLADKQLSHNFYGLALM
HHHHCCCHHHHHHHHHCCCCCCCCCCHHHHCCCEEEEEECCCCEEECHHHCCCEEEEEEE
SGNKPHINDEFSSIIWSLGGAWMWPIYNQQKQLTHFEVPAVNQEALKAAIIYRKLMPYAI
CCCCCCCCHHHHHHHHHCCCEEECCEECCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCC
PADDKFAFNEAANAMASGQVAIWPFAYNNLWSASFKVEANVPGARLGVAQVPGGTPYNGA
CCCCCCHHHHHHHHHHCCCEEEEEEECCCEECCEEEEEECCCCCEEEEEECCCCCCCCCE
YAFAVSYDSKNPQAAYWLLKYMGTYEAQYAYALGGGNPCRMDVVTAPEFNQASKRAIAGA
EEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHH
FEASHIANLFWSTKVLDVGHFTTTAMGQIYPELSHACYAASRHEADSADIFIELSAKIKH
HHHHHHHHHHHHCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHH
LQNTYGEVPAIDKNNSQ
HHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MLFISMLTLVSEESFLFRPLSLLFIGLGLTLTKPSLAEFSLAQIPPLSNKTPITLVAEKG
CHHHHHHHHHCCCCHHHHHHHHHHHHCCCEECCCCHHHCHHHHCCCCCCCCCEEEEECCC
FWTDYLTREMLPKFTEKTGVKVNVVSTELESMFELQTQALLQGEGKYDLLTMEAGWAKEW
CCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH
AANGYTVPLPELAKLYDPDGEKAMERYLEPYYPSLLNILSYHGELHAIPYNNYVMGSHYR
CCCCCEECCHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCEEEECCCCEEECCCCC
ADLFENKTEQTHFQQRFGYPLKPATNFDELQDQAVFFTRKSGELLADKQLSHNFYGLALM
HHHHCCCHHHHHHHHHCCCCCCCCCCHHHHCCCEEEEEECCCCEEECHHHCCCEEEEEEE
SGNKPHINDEFSSIIWSLGGAWMWPIYNQQKQLTHFEVPAVNQEALKAAIIYRKLMPYAI
CCCCCCCCHHHHHHHHHCCCEEECCEECCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCC
PADDKFAFNEAANAMASGQVAIWPFAYNNLWSASFKVEANVPGARLGVAQVPGGTPYNGA
CCCCCCHHHHHHHHHHCCCEEEEEEECCCEECCEEEEEECCCCCEEEEEECCCCCCCCCE
YAFAVSYDSKNPQAAYWLLKYMGTYEAQYAYALGGGNPCRMDVVTAPEFNQASKRAIAGA
EEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHH
FEASHIANLFWSTKVLDVGHFTTTAMGQIYPELSHACYAASRHEADSADIFIELSAKIKH
HHHHHHHHHHHHCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHH
LQNTYGEVPAIDKNNSQ
HHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA