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The map label for this gene is cph2 [H]

Identifier: 117919661

GI number: 117919661

Start: 1416229

End: 1417965

Strand: Reverse

Name: cph2 [H]

Synonym: Shewana3_1212

Alternate gene names: 117919661

Gene position: 1417965-1416229 (Counterclockwise)

Preceding gene: 117919662

Following gene: 117919660

Centisome position: 28.52

GC content: 46.46

Gene sequence:

>1737_bases
ATGAATGCTAAACGACTCACAAGTCTAAAACATAAAATTACGCTGGCCTTTTATATCATTCTGGGCATGGCGTTGCTTAA
TGGCGTTATCGCTATCCTATTGTCACAACAGCTAAGGTCGGAAATCGAACTCTTGGTTAATAGCGATGTGGTGAAAGTGA
CAACCGCGCTGCAACTGGCAAAAAACAGTGAAAGACTGCAAATCATCACCACTGAGTTAAACCATTATGATACCGAGGAG
CAGCGCCTACGTTTGTTGCAAGAACTCACAAGCCAATGGGAACACTTGCTTAGGGATACCAAAACCCTCGCCAGCATGGA
AACCTCGCCGCATATGCATGAGGCGCTTAACCACGCCATAGACACTCAACTTTATTATCAGCAGCAATTACCCCTGCTCA
ACACTTTGACCGACACAGCGCTGCAAGCCAAATTCCAAGCCCAGAATATTCAGGCGAATCTCTCGGGGATGGCAATAGCA
TTTTCCGATAGCATGCAAACTCAGTTGCAGCAAATTCATGGCCACTATAACCGCTTAATCGCCCAAAAGCAGTTGAATGC
AATTGCAGAGAATCTATCAGAAGATCAAAAACTTTCAGCATTTCTTCATCAGGGCGAGCATCTGTTTGTGCTCCTCGATA
ACGTAAAAAATGTGACAAGCCTTGTCGAGCTTAACCAATTACAACGGGATGGGATGCGCCGACTGATAACCATGGACAAC
ATCTCGCGCTCCTTTAATCAAGACAGCGCCATTTATATCGACTGGTTATCGCAAATCAGGCAAAACATGGTGGGTAAAGA
CAACCTTTTTGACCTCTCCCGTAACGCGCTAAAAAGCACCCAAATTGCCAATGCACATTTTGGCTATCAAGCTGGTGCGG
CGCAGGAAATCGCCTCCTTTACCCAAGAATTAGTCAACCATGTAGAAGAAGAAATTCAACTCGCGGGCGCAAATCTTAAG
AGTGACAGCACATCCTTCGTGATTTTGATCTTTTGTGGCGGCATTCTCTATTGCTTCTTTATCTGGCTCACCAGTTGGCA
TTTTATCGCTAAAGGCATCATTAAGCCTGTTATCGCCACCCGTGATGCCATGAATGCCATCGCCAATGAAAAACTCGACA
CCCAAATGCCCATTACCGATAACCTCGAGCTACAACAGATGGTGAGCTCGCTCGAAACCCTTAAAACCTATGCGGCTCAG
GTTAAAGCCATGGCCGAAACCGACGGATTAACCGGCTGTTATAATCGCCGCTATTTAGACAGCCAAATTCAGAAGGAATT
GATTTACGCTAACGATCATAATATGCCCCTCAGCATTGTGATGTTCGATATCGATAACTTTAAGCAATTTAACGACAGAT
ACGGCCATGTACTGGGCGATCAATGCTTAAAGCAAATCGTCAATGCCGCCAAATCGATTCTGCAACGGCCGACGGATATT
CTTGCCCGCTATGGGGGGGAGGAATTTATGCTGTTACTGCCCTCAAGCCATCTAGAGGATGCCTACAAAATTGCCGAACG
TTTGCGCAAAGCCATCATCGCCCTGCACATTCCCCATGAGGACTCCTCCCATTCGGGATTAGTGACCATCAGCTTAGGTG
TAGCCTGCTGGCAACCGTCACAATTAATCGACACCAATAGACTCCTTTGCCAGGCCGATGAAGCACTTTATCAAGCCAAA
CAACAGGGCCGAAACCGCACCGAAGTTTTGCTCAACACCCCCTCACTTTATCCGTAA

Upstream 100 bases:

>100_bases
AAGCGGACAGCGCCGATATTTTTATTGAATTGAGTGCCAAAATTAAGCATCTGCAGAATACCTATGGGGAAGTGCCTGCA
ATTGATAAGAACAATAGCCA

Downstream 100 bases:

>100_bases
GAAGCACATCCTAGAGCGTTTTATTTTTAGCCAAAGCATTGAGTTAGCCTCGCTGAATCCCCATTAGCTAATATACCTAA
GGAAATAGTGCACTGAGGAA

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 578; Mature: 578

Protein sequence:

>578_residues
MNAKRLTSLKHKITLAFYIILGMALLNGVIAILLSQQLRSEIELLVNSDVVKVTTALQLAKNSERLQIITTELNHYDTEE
QRLRLLQELTSQWEHLLRDTKTLASMETSPHMHEALNHAIDTQLYYQQQLPLLNTLTDTALQAKFQAQNIQANLSGMAIA
FSDSMQTQLQQIHGHYNRLIAQKQLNAIAENLSEDQKLSAFLHQGEHLFVLLDNVKNVTSLVELNQLQRDGMRRLITMDN
ISRSFNQDSAIYIDWLSQIRQNMVGKDNLFDLSRNALKSTQIANAHFGYQAGAAQEIASFTQELVNHVEEEIQLAGANLK
SDSTSFVILIFCGGILYCFFIWLTSWHFIAKGIIKPVIATRDAMNAIANEKLDTQMPITDNLELQQMVSSLETLKTYAAQ
VKAMAETDGLTGCYNRRYLDSQIQKELIYANDHNMPLSIVMFDIDNFKQFNDRYGHVLGDQCLKQIVNAAKSILQRPTDI
LARYGGEEFMLLLPSSHLEDAYKIAERLRKAIIALHIPHEDSSHSGLVTISLGVACWQPSQLIDTNRLLCQADEALYQAK
QQGRNRTEVLLNTPSLYP

Sequences:

>Translated_578_residues
MNAKRLTSLKHKITLAFYIILGMALLNGVIAILLSQQLRSEIELLVNSDVVKVTTALQLAKNSERLQIITTELNHYDTEE
QRLRLLQELTSQWEHLLRDTKTLASMETSPHMHEALNHAIDTQLYYQQQLPLLNTLTDTALQAKFQAQNIQANLSGMAIA
FSDSMQTQLQQIHGHYNRLIAQKQLNAIAENLSEDQKLSAFLHQGEHLFVLLDNVKNVTSLVELNQLQRDGMRRLITMDN
ISRSFNQDSAIYIDWLSQIRQNMVGKDNLFDLSRNALKSTQIANAHFGYQAGAAQEIASFTQELVNHVEEEIQLAGANLK
SDSTSFVILIFCGGILYCFFIWLTSWHFIAKGIIKPVIATRDAMNAIANEKLDTQMPITDNLELQQMVSSLETLKTYAAQ
VKAMAETDGLTGCYNRRYLDSQIQKELIYANDHNMPLSIVMFDIDNFKQFNDRYGHVLGDQCLKQIVNAAKSILQRPTDI
LARYGGEEFMLLLPSSHLEDAYKIAERLRKAIIALHIPHEDSSHSGLVTISLGVACWQPSQLIDTNRLLCQADEALYQAK
QQGRNRTEVLLNTPSLYP
>Mature_578_residues
MNAKRLTSLKHKITLAFYIILGMALLNGVIAILLSQQLRSEIELLVNSDVVKVTTALQLAKNSERLQIITTELNHYDTEE
QRLRLLQELTSQWEHLLRDTKTLASMETSPHMHEALNHAIDTQLYYQQQLPLLNTLTDTALQAKFQAQNIQANLSGMAIA
FSDSMQTQLQQIHGHYNRLIAQKQLNAIAENLSEDQKLSAFLHQGEHLFVLLDNVKNVTSLVELNQLQRDGMRRLITMDN
ISRSFNQDSAIYIDWLSQIRQNMVGKDNLFDLSRNALKSTQIANAHFGYQAGAAQEIASFTQELVNHVEEEIQLAGANLK
SDSTSFVILIFCGGILYCFFIWLTSWHFIAKGIIKPVIATRDAMNAIANEKLDTQMPITDNLELQQMVSSLETLKTYAAQ
VKAMAETDGLTGCYNRRYLDSQIQKELIYANDHNMPLSIVMFDIDNFKQFNDRYGHVLGDQCLKQIVNAAKSILQRPTDI
LARYGGEEFMLLLPSSHLEDAYKIAERLRKAIIALHIPHEDSSHSGLVTISLGVACWQPSQLIDTNRLLCQADEALYQAK
QQGRNRTEVLLNTPSLYP

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=192, Percent_Identity=36.4583333333333, Blast_Score=112, Evalue=8e-26,
Organism=Escherichia coli, GI1786584, Length=176, Percent_Identity=33.5227272727273, Blast_Score=109, Evalue=6e-25,
Organism=Escherichia coli, GI145693134, Length=162, Percent_Identity=35.8024691358025, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI87082007, Length=189, Percent_Identity=34.3915343915344, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI87081881, Length=187, Percent_Identity=36.3636363636364, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI1787802, Length=188, Percent_Identity=34.0425531914894, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1788381, Length=197, Percent_Identity=34.5177664974619, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1787816, Length=183, Percent_Identity=31.1475409836066, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI1787541, Length=177, Percent_Identity=31.638418079096, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1788085, Length=166, Percent_Identity=32.5301204819277, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI87081977, Length=172, Percent_Identity=32.5581395348837, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787056, Length=128, Percent_Identity=32.03125, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 65440; Mature: 65440

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS50885 HAMP ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAKRLTSLKHKITLAFYIILGMALLNGVIAILLSQQLRSEIELLVNSDVVKVTTALQLA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
KNSERLQIITTELNHYDTEEQRLRLLQELTSQWEHLLRDTKTLASMETSPHMHEALNHAI
CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
DTQLYYQQQLPLLNTLTDTALQAKFQAQNIQANLSGMAIAFSDSMQTQLQQIHGHYNRLI
HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHH
AQKQLNAIAENLSEDQKLSAFLHQGEHLFVLLDNVKNVTSLVELNQLQRDGMRRLITMDN
HHHHHHHHHHHCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
ISRSFNQDSAIYIDWLSQIRQNMVGKDNLFDLSRNALKSTQIANAHFGYQAGAAQEIASF
HHHHCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
TQELVNHVEEEIQLAGANLKSDSTSFVILIFCGGILYCFFIWLTSWHFIAKGIIKPVIAT
HHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RDAMNAIANEKLDTQMPITDNLELQQMVSSLETLKTYAAQVKAMAETDGLTGCYNRRYLD
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
SQIQKELIYANDHNMPLSIVMFDIDNFKQFNDRYGHVLGDQCLKQIVNAAKSILQRPTDI
HHHHHHHHEECCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LARYGGEEFMLLLPSSHLEDAYKIAERLRKAIIALHIPHEDSSHSGLVTISLGVACWQPS
HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCEEEEEECEEECCCH
QLIDTNRLLCQADEALYQAKQQGRNRTEVLLNTPSLYP
HHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
>Mature Secondary Structure
MNAKRLTSLKHKITLAFYIILGMALLNGVIAILLSQQLRSEIELLVNSDVVKVTTALQLA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
KNSERLQIITTELNHYDTEEQRLRLLQELTSQWEHLLRDTKTLASMETSPHMHEALNHAI
CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
DTQLYYQQQLPLLNTLTDTALQAKFQAQNIQANLSGMAIAFSDSMQTQLQQIHGHYNRLI
HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHH
AQKQLNAIAENLSEDQKLSAFLHQGEHLFVLLDNVKNVTSLVELNQLQRDGMRRLITMDN
HHHHHHHHHHHCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
ISRSFNQDSAIYIDWLSQIRQNMVGKDNLFDLSRNALKSTQIANAHFGYQAGAAQEIASF
HHHHCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
TQELVNHVEEEIQLAGANLKSDSTSFVILIFCGGILYCFFIWLTSWHFIAKGIIKPVIAT
HHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RDAMNAIANEKLDTQMPITDNLELQQMVSSLETLKTYAAQVKAMAETDGLTGCYNRRYLD
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
SQIQKELIYANDHNMPLSIVMFDIDNFKQFNDRYGHVLGDQCLKQIVNAAKSILQRPTDI
HHHHHHHHEECCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LARYGGEEFMLLLPSSHLEDAYKIAERLRKAIIALHIPHEDSSHSGLVTISLGVACWQPS
HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCEEEEEECEEECCCH
QLIDTNRLLCQADEALYQAKQQGRNRTEVLLNTPSLYP
HHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]