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The map label for this gene is raiA [H]

Identifier: 117919582

GI number: 117919582

Start: 1338588

End: 1338944

Strand: Reverse

Name: raiA [H]

Synonym: Shewana3_1133

Alternate gene names: 117919582

Gene position: 1338944-1338588 (Counterclockwise)

Preceding gene: 117919584

Following gene: 117919581

Centisome position: 26.93

GC content: 42.86

Gene sequence:

>357_bases
ATGCTAAAGATTACGAGCAAACAACTAGAAGTCACTGCCCCAATCCGTGAACGCATTGAAAGCCGTTTTGACAAACTTTC
TAGGCACGATGTGCAGTTGATTAATCCCCATGTCATCATCACAGAGGAGAAACCTGGTTTCAAAATTGAAGCATCGGTTG
GCATCCCAAATGGAGAACTTTTTGCTCAAGCAAAACACGACAATCTTTATGCAGCCATTACGGCCATGGGTCAAAAATTA
GAGAAACAACTCAATCGATTAACCCATAAACCTGAAGCACAACGTTTCGCATCCATTACTCATCCCGAAGACGCTGTTAA
TGTCGAGGATGATTACGAGGAGGAAGATGCAGCTTAA

Upstream 100 bases:

>100_bases
GAACAGAACTGAACGGGGTAAAAAATGTGATTTAGATCTCGTTTTTAAGGGTGTAGATTGGTAATCTGAAATCGAAGGAA
ACAAATAGAAGGTGCAACAT

Downstream 100 bases:

>100_bases
GTTACTCGATGTTAGTGCGAGACCACATCACTTCGAGAGCATAAAGTAGATAAGGTTTAATAGGTCACATTTTTTAGCAA
AAGTTTGATAGACCATCCTA

Product: SSU ribosomal protein S30P / sigma 54 modulation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MLKITSKQLEVTAPIRERIESRFDKLSRHDVQLINPHVIITEEKPGFKIEASVGIPNGELFAQAKHDNLYAAITAMGQKL
EKQLNRLTHKPEAQRFASITHPEDAVNVEDDYEEEDAA

Sequences:

>Translated_118_residues
MLKITSKQLEVTAPIRERIESRFDKLSRHDVQLINPHVIITEEKPGFKIEASVGIPNGELFAQAKHDNLYAAITAMGQKL
EKQLNRLTHKPEAQRFASITHPEDAVNVEDDYEEEDAA
>Mature_118_residues
MLKITSKQLEVTAPIRERIESRFDKLSRHDVQLINPHVIITEEKPGFKIEASVGIPNGELFAQAKHDNLYAAITAMGQKL
EKQLNRLTHKPEAQRFASITHPEDAVNVEDDYEEEDAA

Specific function: During environmental stress such as cold shock or excessive cell density at stationary phase, stabilizes the 70S ribosome against dissociation, inhibits translation initiation and increase translation accuracy. When normal growth conditions are restored,

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

Organism=Escherichia coli, GI1788949, Length=113, Percent_Identity=46.0176991150442, Blast_Score=100, Evalue=2e-23,

Paralogues:

None

Copy number: 600 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 13375; Mature: 13375

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKITSKQLEVTAPIRERIESRFDKLSRHDVQLINPHVIITEEKPGFKIEASVGIPNGEL
CCCCCCCCEEEEHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCCEEEEEECCCCCCCE
FAQAKHDNLYAAITAMGQKLEKQLNRLTHKPEAQRFASITHPEDAVNVEDDYEEEDAA
EEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLKITSKQLEVTAPIRERIESRFDKLSRHDVQLINPHVIITEEKPGFKIEASVGIPNGEL
CCCCCCCCEEEEHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCCEEEEEECCCCCCCE
FAQAKHDNLYAAITAMGQKLEKQLNRLTHKPEAQRFASITHPEDAVNVEDDYEEEDAA
EEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]