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The map label for this gene is 117919584

Identifier: 117919584

GI number: 117919584

Start: 1339997

End: 1340446

Strand: Reverse

Name: 117919584

Synonym: Shewana3_1135

Alternate gene names: NA

Gene position: 1340446-1339997 (Counterclockwise)

Preceding gene: 117919586

Following gene: 117919582

Centisome position: 26.96

GC content: 44.67

Gene sequence:

>450_bases
ATGAAAAAATTACTCCTGACTCTCGTTGCCGGTACCTTATTGGCTTCAACTGCACAAGCACACAATTTTGAAGATGCGAA
GGACGCGATTGAATATCGCCAATCTGCATTTGGCCTGATTGCTTATAACTTTGGCGATATGGGCGCAATGATGAAAGGCA
AGAAACCTTTCGAAGCTGAAACCTTCGCAATGCGCGCCAACAATGTTGCTGCTCTTTCGCACATTCCTTTCGAAGGCTTT
ATTGAAGGTTCAGATAAAGGCGATACCGAAGCGCTAGCCAAAGTATGGCAAGATAAGGCTGACTTCGACGCTAAGATGAA
AACCTTCCAAGAAAATGCCGCTATTTTAGCGACTGTGGCTCAAAAAGGTGACCAAGCTGAAATCAAGCAAGCCTTTATGA
ACACCGGCAAGAGCTGTAAAGGCTGTCACGACGTGTACAAAAAAGACTAA

Upstream 100 bases:

>100_bases
GCCTAGACAAAAACTGACAAAAATGCTTCTAGTACATTGAGTTAATTTGTGTACAATAGGAGCGCAATGTCACACTTCGA
CGCTAATTTGTGAGAATACG

Downstream 100 bases:

>100_bases
TTACGCGTTGTAATGTCTAATAAAAAAGCCTGCTACATGCAGGCTTTTTTAATGTTCAGCACTTGTTAGAGCACTTGTAC
TATGGGCCACATCAAATAGG

Product: cytochrome c, class II

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MKKLLLTLVAGTLLASTAQAHNFEDAKDAIEYRQSAFGLIAYNFGDMGAMMKGKKPFEAETFAMRANNVAALSHIPFEGF
IEGSDKGDTEALAKVWQDKADFDAKMKTFQENAAILATVAQKGDQAEIKQAFMNTGKSCKGCHDVYKKD

Sequences:

>Translated_149_residues
MKKLLLTLVAGTLLASTAQAHNFEDAKDAIEYRQSAFGLIAYNFGDMGAMMKGKKPFEAETFAMRANNVAALSHIPFEGF
IEGSDKGDTEALAKVWQDKADFDAKMKTFQENAAILATVAQKGDQAEIKQAFMNTGKSCKGCHDVYKKD
>Mature_149_residues
MKKLLLTLVAGTLLASTAQAHNFEDAKDAIEYRQSAFGLIAYNFGDMGAMMKGKKPFEAETFAMRANNVAALSHIPFEGF
IEGSDKGDTEALAKVWQDKADFDAKMKTFQENAAILATVAQKGDQAEIKQAFMNTGKSCKGCHDVYKKD

Specific function: Cytochrome c' is the most widely occurring bacterial c- type cytochrome. Cytochromes c' are high-spin proteins and the heme has no sixth ligand. Their exact function is not known [H]

COG id: COG3909

COG function: function code C; Cytochrome c556

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010980
- InterPro:   IPR002321
- InterPro:   IPR012127 [H]

Pfam domain/function: PF01322 Cytochrom_C_2 [H]

EC number: NA

Molecular weight: Translated: 16281; Mature: 16281

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: PS51009 CYTCII

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLLLTLVAGTLLASTAQAHNFEDAKDAIEYRQSAFGLIAYNFGDMGAMMKGKKPFEAE
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEECCCCCCHHHCCCCCCCHH
TFAMRANNVAALSHIPFEGFIEGSDKGDTEALAKVWQDKADFDAKMKTFQENAAILATVA
HHHHHCCCEEEHCCCCCCCEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHH
QKGDQAEIKQAFMNTGKSCKGCHDVYKKD
HCCCHHHHHHHHHHCCCCCCHHHHHHCCC
>Mature Secondary Structure
MKKLLLTLVAGTLLASTAQAHNFEDAKDAIEYRQSAFGLIAYNFGDMGAMMKGKKPFEAE
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEECCCCCCHHHCCCCCCCHH
TFAMRANNVAALSHIPFEGFIEGSDKGDTEALAKVWQDKADFDAKMKTFQENAAILATVA
HHHHHCCCEEEHCCCCCCCEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHH
QKGDQAEIKQAFMNTGKSCKGCHDVYKKD
HCCCHHHHHHHHHHCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6273892; 2829828 [H]