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The map label for this gene is mdcF [H]

Identifier: 117919554

GI number: 117919554

Start: 1299101

End: 1300063

Strand: Reverse

Name: mdcF [H]

Synonym: Shewana3_1105

Alternate gene names: 117919554

Gene position: 1300063-1299101 (Counterclockwise)

Preceding gene: 117919556

Following gene: 117919553

Centisome position: 26.15

GC content: 48.18

Gene sequence:

>963_bases
ATGAACATTTTAACCCCTCTGTTTGCCGTCTTCGGGATCATGCTACTGGGCACACTAGTGCAAAAACTGCGCTTTCTTCC
AGTAGAAACAGACCAAGTACTCAATCAATATGTTTACTATATTGCGTTTCCTGCCATCCTGTTGATAGCACTGGCGCAGC
AGCCCATTGAAGAGATCCTACAGTGGGGGTTTATCGCCGGCTACAGCGCAGCCATGCTGGTGATTTACCTCGTTTGTATC
GGCATATCCCTGCTGGCTAACCCTAAACAACATGCGATTGCCGCCGTGCGCGCCTTAAATGCCACTTTTGGTAATACCGC
ATTTATTGGTATTCCACTCCTTATCATCTTATTTCCCCAACAACAAAGCGCCTTAGTTGCCGCTGCGATTGCCAGTTTAT
TATCCGTACTCATGTTTGCCGTGGCCTTGGTCTCGCTAGAACTCGCCACCAATAAACAACGACAACATCACGCCGCGGTG
ATCATGTTGTTAGCCGTGGTGAAAAACCCAATTGTGATAGGTTGCTTTATTGGCGTGGCCATTTCGGCATTAGGGATAAC
TCTCCCCTCCGGTTTGGCAATGATGATCCAGCAGATAGGCAATACGTCCAGTCCCTGCGCCCTCTTTGCCGTCGGCATGG
TGTTGGCGAAAGCTATGCGCTATCAAAAAGATAGCAAGGTCTTTAGCCTGACAAACTTTATCGAACTGAGCCTTATCAAC
CTGTTTAAACTTATCCTGCAACCCGCCTTGGTTTACTTCATGTTAAAAGGCGTGGGTGTCACGGGCGACTATCTCGTTAT
GGGCGTCATCCTTAGCGCCTTACCCACGGCGGCAAGTGTCTATCTGTTGGCTCAGCGCTATAACACTCAAGCCTCCAGCA
GTGCCCAAGGGATACTCTTTGGTACCATAGTGACCTTTTTCAGCTTACCCATTCTGGAACAACTAGTTAAAACCTATTCA
TAA

Upstream 100 bases:

>100_bases
AATAACATCCCAACCGATCTCACCTTGGCGGCTTGAATGAAATCAAGCATCACTAAGGCTATCTCGCGGGATAAGCAACA
CAAAAGGATGAGTGAGGGTC

Downstream 100 bases:

>100_bases
ACAAATAATTAGATTTTATGATATAGCGACATGTCGAATATTCACCCAAAGCCACTTTACTGTATATAAATTCAGTATAT
ACTGTTTATCAATACAGTGA

Product: transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MNILTPLFAVFGIMLLGTLVQKLRFLPVETDQVLNQYVYYIAFPAILLIALAQQPIEEILQWGFIAGYSAAMLVIYLVCI
GISLLANPKQHAIAAVRALNATFGNTAFIGIPLLIILFPQQQSALVAAAIASLLSVLMFAVALVSLELATNKQRQHHAAV
IMLLAVVKNPIVIGCFIGVAISALGITLPSGLAMMIQQIGNTSSPCALFAVGMVLAKAMRYQKDSKVFSLTNFIELSLIN
LFKLILQPALVYFMLKGVGVTGDYLVMGVILSALPTAASVYLLAQRYNTQASSSAQGILFGTIVTFFSLPILEQLVKTYS

Sequences:

>Translated_320_residues
MNILTPLFAVFGIMLLGTLVQKLRFLPVETDQVLNQYVYYIAFPAILLIALAQQPIEEILQWGFIAGYSAAMLVIYLVCI
GISLLANPKQHAIAAVRALNATFGNTAFIGIPLLIILFPQQQSALVAAAIASLLSVLMFAVALVSLELATNKQRQHHAAV
IMLLAVVKNPIVIGCFIGVAISALGITLPSGLAMMIQQIGNTSSPCALFAVGMVLAKAMRYQKDSKVFSLTNFIELSLIN
LFKLILQPALVYFMLKGVGVTGDYLVMGVILSALPTAASVYLLAQRYNTQASSSAQGILFGTIVTFFSLPILEQLVKTYS
>Mature_320_residues
MNILTPLFAVFGIMLLGTLVQKLRFLPVETDQVLNQYVYYIAFPAILLIALAQQPIEEILQWGFIAGYSAAMLVIYLVCI
GISLLANPKQHAIAAVRALNATFGNTAFIGIPLLIILFPQQQSALVAAAIASLLSVLMFAVALVSLELATNKQRQHHAAV
IMLLAVVKNPIVIGCFIGVAISALGITLPSGLAMMIQQIGNTSSPCALFAVGMVLAKAMRYQKDSKVFSLTNFIELSLIN
LFKLILQPALVYFMLKGVGVTGDYLVMGVILSALPTAASVYLLAQRYNTQASSSAQGILFGTIVTFFSLPILEQLVKTYS

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 34429; Mature: 34429

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILTPLFAVFGIMLLGTLVQKLRFLPVETDQVLNQYVYYIAFPAILLIALAQQPIEEIL
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QWGFIAGYSAAMLVIYLVCIGISLLANPKQHAIAAVRALNATFGNTAFIGIPLLIILFPQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
QQSALVAAAIASLLSVLMFAVALVSLELATNKQRQHHAAVIMLLAVVKNPIVIGCFIGVA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
ISALGITLPSGLAMMIQQIGNTSSPCALFAVGMVLAKAMRYQKDSKVFSLTNFIELSLIN
HHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LFKLILQPALVYFMLKGVGVTGDYLVMGVILSALPTAASVYLLAQRYNTQASSSAQGILF
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
GTIVTFFSLPILEQLVKTYS
HHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNILTPLFAVFGIMLLGTLVQKLRFLPVETDQVLNQYVYYIAFPAILLIALAQQPIEEIL
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QWGFIAGYSAAMLVIYLVCIGISLLANPKQHAIAAVRALNATFGNTAFIGIPLLIILFPQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
QQSALVAAAIASLLSVLMFAVALVSLELATNKQRQHHAAVIMLLAVVKNPIVIGCFIGVA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
ISALGITLPSGLAMMIQQIGNTSSPCALFAVGMVLAKAMRYQKDSKVFSLTNFIELSLIN
HHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LFKLILQPALVYFMLKGVGVTGDYLVMGVILSALPTAASVYLLAQRYNTQASSSAQGILF
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
GTIVTFFSLPILEQLVKTYS
HHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10858449; 11481430 [H]