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The map label for this gene is secF [H]

Identifier: 117919469

GI number: 117919469

Start: 1192097

End: 1192981

Strand: Direct

Name: secF [H]

Synonym: Shewana3_1020

Alternate gene names: 117919469

Gene position: 1192097-1192981 (Clockwise)

Preceding gene: 117919468

Following gene: 117919471

Centisome position: 23.98

GC content: 48.7

Gene sequence:

>885_bases
ATGAAGAATATCAATCTGACTAAATGGCGTTATGTATCGAGCGCTATCTCTATCTTTTTAATGCTGGCCTCACTCACCAT
CATCGGGATGAAAGGCTTTAACTGGGGCTTAGACTTTACTGGCGGTGTGGTGACTGAGGTTCAGCTCGACAGGCGTATCA
CCAGCAGCGAGTTGCAACCCTTATTGAACGCGGCTTATCAGCAAGAGGTGACGGTGATTTCGGCCAGTGAGCCTGGGCGT
TGGGTATTACGCTATGCGGACACTGCACAAAGTAATGTTGATATTGCGCAAACCTTAGCGCCACTGGGTGAGGTGCAAGT
ACTGAACACCAGTATTGTCGGCCCGCAAGTGGGTAAAGAGTTAGCCGAGCAGGGCGGTCTTGCCCTGTTGGTGGCCATGC
TGTGTATCTTAGGGTATTTGAGTTATCGCTTCGAATGGCGTCTCGCCTCCGGCGCGTTATTTGCGCTGGTGCACGACGTG
ATTTTTGTGCTCGCCTTTTTCTCATTAACCCAGATGGAGTTTAATTTAACTGTACTCGCTGCAGTGCTGGCGATTTTAGG
TTATTCACTCAACGATTCGATCATTATCGCCGACCGGATTCGGGAGTTATTGATTGCTAAGCCAAAGCTTGCTATTCAGG
AGATTAATAACCAAGCGATTGTCGCGACATTTTCCCGCACTATGGTGACTTCGGGAACCACCTTAATGACGGTCGGAGCG
TTATGGATTATGGGTGGTGGGCCGTTGGAAGGATTCTCGATAGCCATGTTTATCGGCATCTTGACTGGTACTTTCTCATC
GATATCGGTCGGGACTTCATTGCCTGAATTTTTGGGATTAACGCCAGAGCATTATAAAGTGCAAGTCATCACCGACACGC
CTTAA

Upstream 100 bases:

>100_bases
TGGGCCTGCTAACCAGTATGTTTACCGGTATTTTTGCCTCAAGAGCCTTAATCAACCTAGTGTATGGGCGTGATGCGCGC
CGCCATGTGAGGGTATAACT

Downstream 100 bases:

>100_bases
GTGCTGAAAACAAAACGGCCACTCGCTTGAGTGGCCGTTTTGTTTAAGGCTGGAAAATTACTTAGCTCTTGGCAGGGCAA
TTTTCATTTCAGGCGATTGA

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MKNINLTKWRYVSSAISIFLMLASLTIIGMKGFNWGLDFTGGVVTEVQLDRRITSSELQPLLNAAYQQEVTVISASEPGR
WVLRYADTAQSNVDIAQTLAPLGEVQVLNTSIVGPQVGKELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHDV
IFVLAFFSLTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTLMTVGA
LWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPEFLGLTPEHYKVQVITDTP

Sequences:

>Translated_294_residues
MKNINLTKWRYVSSAISIFLMLASLTIIGMKGFNWGLDFTGGVVTEVQLDRRITSSELQPLLNAAYQQEVTVISASEPGR
WVLRYADTAQSNVDIAQTLAPLGEVQVLNTSIVGPQVGKELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHDV
IFVLAFFSLTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTLMTVGA
LWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPEFLGLTPEHYKVQVITDTP
>Mature_294_residues
MKNINLTKWRYVSSAISIFLMLASLTIIGMKGFNWGLDFTGGVVTEVQLDRRITSSELQPLLNAAYQQEVTVISASEPGR
WVLRYADTAQSNVDIAQTLAPLGEVQVLNTSIVGPQVGKELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHDV
IFVLAFFSLTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTLMTVGA
LWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPEFLGLTPEHYKVQVITDTP

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=291, Percent_Identity=39.8625429553265, Blast_Score=206, Evalue=2e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 31885; Mature: 31885

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNINLTKWRYVSSAISIFLMLASLTIIGMKGFNWGLDFTGGVVTEVQLDRRITSSELQP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHCCCHHHHHH
LLNAAYQQEVTVISASEPGRWVLRYADTAQSNVDIAQTLAPLGEVQVLNTSIVGPQVGKE
HHHHHHHCCEEEEECCCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEEEEECCCHHHHHH
LAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHDVIFVLAFFSLTQMEFNLTVLA
HHHHCCHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTLMTVGA
HHHHHHCCCCCCCEEEHHHHHHHHHCCCCHHHHHCCCCEEEEEEHHHHHCCCCHHHEEHH
LWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPEFLGLTPEHYKVQVITDTP
HHEECCCCCCHHHHHHHHHHHHCCCCHHCCCCCCHHHHCCCCCCEEEEEEECCC
>Mature Secondary Structure
MKNINLTKWRYVSSAISIFLMLASLTIIGMKGFNWGLDFTGGVVTEVQLDRRITSSELQP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHCCCHHHHHH
LLNAAYQQEVTVISASEPGRWVLRYADTAQSNVDIAQTLAPLGEVQVLNTSIVGPQVGKE
HHHHHHHCCEEEEECCCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEEEEECCCHHHHHH
LAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHDVIFVLAFFSLTQMEFNLTVLA
HHHHCCHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTLMTVGA
HHHHHHCCCCCCCEEEHHHHHHHHHCCCCHHHHHCCCCEEEEEEHHHHHCCCCHHHEEHH
LWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPEFLGLTPEHYKVQVITDTP
HHEECCCCCCHHHHHHHHHHHHCCCCHHCCCCCCHHHHCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]