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The map label for this gene is secD [H]

Identifier: 117919468

GI number: 117919468

Start: 1190220

End: 1192094

Strand: Direct

Name: secD [H]

Synonym: Shewana3_1019

Alternate gene names: 117919468

Gene position: 1190220-1192094 (Clockwise)

Preceding gene: 117919467

Following gene: 117919469

Centisome position: 23.94

GC content: 51.47

Gene sequence:

>1875_bases
ATGGATAAAATTCAGAGTAAAAAGCTGCTAAATCATTATTCAGCTTGGAAATACCTTGTGCTTATCGTCACCATTATCGT
GATGTTATTCAGTGCATTACCGACTTGGTATGGAGAAGACGCCGCCGTGCAGGTGGGCGCTAAAGCGGGGCTTAACTTAA
CCCCCATTGAACTGCGGGATAAATTAAAGGCGCAGGGCGTTGAGGTTAAACGTATCGAAGTTAAGCATGCCCAACAGGGC
AGTGCCAACAGCTCAGAAGGCGGGCAAACCCTTATCGTGCTCAATGATGACAGCGAGCAAACCTTGGTAAAGACCTTAGT
GTCATCCATGGTGAGTGAGCCGAAAGAGCTCACGCTGGCACTGGTGAGTGCTGCGCCAAGCTGGCTGCAAAATATGGGCT
TTGAACCGATTAAACTCGGGCTCGATTTGCGCGGTGGGGTGCAATTTTTGCTCGATGTGGATGTGCAGCCTGTCTATCAA
GCCCAAGCCGATGCGTTAGTCGAGTCCCTTAGGCTGTTTTTGCGTGAACAGCAAATTCGTGGCGCCAGTGTGCGTATTGA
TAGCACGCGCGATGATGCAGGGTTGCAAATCGAAATTGCATTTAATGACGCGGCTCAATCCACCAATAACGCGCGCTCAA
CCATTCGCCAGTTTATGCAGCAAAGCTACCCGACTTGGCAATTAACCAATGCGGATAATGGCTTAGTGGTCAAACTCGCT
CAAGAAGAGCAAATCAAGTTACGTAATTTAACCGTGCAGCAAAACCTGCAAATTATGCGTAGCCGGATTGAGGAGCTGGG
CATCACTGAGGCTCTAGTGCAGCGTCAGGGCGAACATCGTATTCGTATCGAGCTGCCCGGTGTCCAAGACCCTGCTGCAG
CTAAAAACGTGATAGGCGCGACCGCAAGTCTGGCCTTTTTTGAGGTCAAAGAGTCGGGTTCAGTGAATGCGCAGGTGCTG
AAGGATAAATCTGGCAATCCTGTTTATGTGGCCCGCACGCCCGTATTGGGTGGCGATCATATTGTCGATGCCCGCGCCAA
TATTGGTGAAATGGGCATGGCCGAAGTGAACATTCACCTCGACCGTATCGGCGGCCAAAAAATGTCGGAGTTCTCCCGCG
CCAATATCGGTAAACCGATGGCAACATCCTACAGCGAATATAGCCGGGATGAGCAGGGCAAAGCTAAGCAAACCCAAGAG
ATTATCAGTGTCGCGACCATTCAATCACAGCTCGGAGATCGCTTTAGAATTACGGGCGCAGGCACCTATCAAGAGGCGCA
GCAATTAGCGCTGCTGCTACGCGCGGGCTCAATGACGGCGCCCGTGACCATTGTTGAAGAGCGTACCATTGGCCCAACCC
TTGGCGCCGAAAACATTCAAAACGGTTTTGCAGCGCTCGGTCTTGGCATGGGAATTACCTTGCTGTTTATGGCGCTCTGG
TATCGCCGTCTTGGTTGGGTGGCCAATGTGGCCTTGATTGCTAACATGGTGATCCTCTTTGGTTTGCTGGCGCTGATCCC
CGGCGCGGTATTGACCTTACCCGGTATTGCCGGTCTGGTGTTAACGGTCGGCATGGCGGTCGATACCAACGTACTGATCT
TCGAGCGGATTAAAGACAAGTTGAAAGAGGGGCGCAGCTTCGCTCTGGCTATCGACACTGGCTTTGACAGTGCGTTTTCA
ACCATTTTCGACGCTAACTTCACCACTATGATTACCGCGGTTGTGCTCTATTCCATCGGTAATGGTCCCATCCAAGGCTT
TGCCTTGACCTTGGGTTTGGGCCTGCTAACCAGTATGTTTACCGGTATTTTTGCCTCAAGAGCCTTAATCAACCTAGTGT
ATGGGCGTGATGCGCGCCGCCATGTGAGGGTATAA

Upstream 100 bases:

>100_bases
CAGGTTTCACCGTAATACAGTGATTGTTCGCTCATGGTTATTAGCGCTATTTGCACTACAGATGGCTATCAGAGCGGGCA
ATATCATGCGAGTGATATCT

Downstream 100 bases:

>100_bases
CTATGAAGAATATCAATCTGACTAAATGGCGTTATGTATCGAGCGCTATCTCTATCTTTTTAATGCTGGCCTCACTCACC
ATCATCGGGATGAAAGGCTT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 624; Mature: 624

Protein sequence:

>624_residues
MDKIQSKKLLNHYSAWKYLVLIVTIIVMLFSALPTWYGEDAAVQVGAKAGLNLTPIELRDKLKAQGVEVKRIEVKHAQQG
SANSSEGGQTLIVLNDDSEQTLVKTLVSSMVSEPKELTLALVSAAPSWLQNMGFEPIKLGLDLRGGVQFLLDVDVQPVYQ
AQADALVESLRLFLREQQIRGASVRIDSTRDDAGLQIEIAFNDAAQSTNNARSTIRQFMQQSYPTWQLTNADNGLVVKLA
QEEQIKLRNLTVQQNLQIMRSRIEELGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGATASLAFFEVKESGSVNAQVL
KDKSGNPVYVARTPVLGGDHIVDARANIGEMGMAEVNIHLDRIGGQKMSEFSRANIGKPMATSYSEYSRDEQGKAKQTQE
IISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIQNGFAALGLGMGITLLFMALW
YRRLGWVANVALIANMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFS
TIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDARRHVRV

Sequences:

>Translated_624_residues
MDKIQSKKLLNHYSAWKYLVLIVTIIVMLFSALPTWYGEDAAVQVGAKAGLNLTPIELRDKLKAQGVEVKRIEVKHAQQG
SANSSEGGQTLIVLNDDSEQTLVKTLVSSMVSEPKELTLALVSAAPSWLQNMGFEPIKLGLDLRGGVQFLLDVDVQPVYQ
AQADALVESLRLFLREQQIRGASVRIDSTRDDAGLQIEIAFNDAAQSTNNARSTIRQFMQQSYPTWQLTNADNGLVVKLA
QEEQIKLRNLTVQQNLQIMRSRIEELGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGATASLAFFEVKESGSVNAQVL
KDKSGNPVYVARTPVLGGDHIVDARANIGEMGMAEVNIHLDRIGGQKMSEFSRANIGKPMATSYSEYSRDEQGKAKQTQE
IISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIQNGFAALGLGMGITLLFMALW
YRRLGWVANVALIANMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFS
TIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDARRHVRV
>Mature_624_residues
MDKIQSKKLLNHYSAWKYLVLIVTIIVMLFSALPTWYGEDAAVQVGAKAGLNLTPIELRDKLKAQGVEVKRIEVKHAQQG
SANSSEGGQTLIVLNDDSEQTLVKTLVSSMVSEPKELTLALVSAAPSWLQNMGFEPIKLGLDLRGGVQFLLDVDVQPVYQ
AQADALVESLRLFLREQQIRGASVRIDSTRDDAGLQIEIAFNDAAQSTNNARSTIRQFMQQSYPTWQLTNADNGLVVKLA
QEEQIKLRNLTVQQNLQIMRSRIEELGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGATASLAFFEVKESGSVNAQVL
KDKSGNPVYVARTPVLGGDHIVDARANIGEMGMAEVNIHLDRIGGQKMSEFSRANIGKPMATSYSEYSRDEQGKAKQTQE
IISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIQNGFAALGLGMGITLLFMALW
YRRLGWVANVALIANMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFS
TIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDARRHVRV

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=627, Percent_Identity=41.9457735247209, Blast_Score=474, Evalue=1e-134,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 67870; Mature: 67870

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKIQSKKLLNHYSAWKYLVLIVTIIVMLFSALPTWYGEDAAVQVGAKAGLNLTPIELRD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHH
KLKAQGVEVKRIEVKHAQQGSANSSEGGQTLIVLNDDSEQTLVKTLVSSMVSEPKELTLA
HHHHCCCEEEEEEEHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCHHHHHH
LVSAAPSWLQNMGFEPIKLGLDLRGGVQFLLDVDVQPVYQAQADALVESLRLFLREQQIR
HHHHCHHHHHHCCCCEEEECEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCC
GASVRIDSTRDDAGLQIEIAFNDAAQSTNNARSTIRQFMQQSYPTWQLTNADNGLVVKLA
CCEEEEECCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCEEEEEC
QEEQIKLRNLTVQQNLQIMRSRIEELGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGA
CCCCHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCC
TASLAFFEVKESGSVNAQVLKDKSGNPVYVARTPVLGGDHIVDARANIGEMGMAEVNIHL
HHHEEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCEEECCCCCCCCCEEEEEEEE
DRIGGQKMSEFSRANIGKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGA
ECCCCHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
GTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIQNGFAALGLGMGITLLFMALW
CCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YRRLGWVANVALIANMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHH
LKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF
HHCCCEEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
TGIFASRALINLVYGRDARRHVRV
HHHHHHHHHHHHHHCCCCHHCCCC
>Mature Secondary Structure
MDKIQSKKLLNHYSAWKYLVLIVTIIVMLFSALPTWYGEDAAVQVGAKAGLNLTPIELRD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHH
KLKAQGVEVKRIEVKHAQQGSANSSEGGQTLIVLNDDSEQTLVKTLVSSMVSEPKELTLA
HHHHCCCEEEEEEEHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCHHHHHH
LVSAAPSWLQNMGFEPIKLGLDLRGGVQFLLDVDVQPVYQAQADALVESLRLFLREQQIR
HHHHCHHHHHHCCCCEEEECEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCC
GASVRIDSTRDDAGLQIEIAFNDAAQSTNNARSTIRQFMQQSYPTWQLTNADNGLVVKLA
CCEEEEECCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCEEEEEC
QEEQIKLRNLTVQQNLQIMRSRIEELGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGA
CCCCHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCC
TASLAFFEVKESGSVNAQVLKDKSGNPVYVARTPVLGGDHIVDARANIGEMGMAEVNIHL
HHHEEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCEEECCCCCCCCCEEEEEEEE
DRIGGQKMSEFSRANIGKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGA
ECCCCHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
GTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIQNGFAALGLGMGITLLFMALW
CCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YRRLGWVANVALIANMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHH
LKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF
HHCCCEEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
TGIFASRALINLVYGRDARRHVRV
HHHHHHHHHHHHHHCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]