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The map label for this gene is 117919353

Identifier: 117919353

GI number: 117919353

Start: 1052292

End: 1053242

Strand: Reverse

Name: 117919353

Synonym: Shewana3_0902

Alternate gene names: NA

Gene position: 1053242-1052292 (Counterclockwise)

Preceding gene: 117919360

Following gene: 117919352

Centisome position: 21.18

GC content: 51.42

Gene sequence:

>951_bases
ATGAAGAAAACCCTACTGCTGGTATTTTGCACACTTTTTTTAGCGGCCTGTCAGCCCAAAGCCGATGATATTCGAGTGCT
TTCACAGGAACCCTCATACAGCGCCAGCCTCTCTAGCGACGGCAATATCGCCATTGTCGCCACCCAAAGCCAAGGAGTGC
AATGTTGGGACTTAACCACCCACAGCCTCAAGTACCAATGGGTGCATGGCGACCTCAACACTGGCGTCACGGCCACCGCT
ATTTCCCCTAACGGCGAGTTCGCCGCCTCGTTAAGCCGCGATTCAGTTGCCCTGTGGACAATAGCCGACGGCAAATCCCG
TGGATGGTGGTCGCTGCCCGCCTCGGGTGAGAGTGTGGCGGTAGCTAACAATGGCGCTTTACTGATTGGTTTGAACGATG
GCAGCGTGATGTCACTCAATGCCGCTAAAACCGCATTGATAAAATTCTTAGGGCATAAGGAAAGAGTGAATACGGTTGCG
CTTTCCGCCGATGGACGCATTGCCCTCTCGGGTTCCAATGATATGCAAGCTATCCTGTGGCAGGCGCAAACTGGGCAGCC
TATCCACACTTGGGATGTAGGTAGCCGAGTAACTAAGGTGGCACTCAACGACAGCGGCACATTAAGCTTTACCAATGGCA
GTACCAATGAGGCGAAGATTTGGGACAACACTAATGGTAAGCTGTTAAATCAATTAGAGATTAAACGTCGGCAAATGACC
TTCTCGGCGGTACGTTTCGCCAAGCAAGATACTCAGTTGCTCACAGGCACGCCCGCACGCGAAGTCATACTCTGGCAACG
CCAAACGGGTAAACCTATTGCTAAGTGGCAAATTGCGCTGACTAAAAACAGCCAAAACCGAGGAGCCGTTGTATACTCTG
TGGCAATTCGAGATACCAATAAAGTGGTTAGTATCAGTAGCCAAGGCCTAGTTGAGACTTGGCAGGAGTAG

Upstream 100 bases:

>100_bases
ATACTAGTTATCTGGGTTATACCAACTAGATTCTGTTATGTGTTAACTGTGATTAATCTCACTCTACCGGACTAGAGACA
CCAACTTTAGGAGCAAGTTC

Downstream 100 bases:

>100_bases
AGGTTAGTCATGCAAGGCGTACAAGAACAGATTGAAGAGCTGCAAATGAAATTGGCTTTTCAAGAGCTCACGGTCGAAGA
GTTAAACCAAGAGGTCATTA

Product: WD-40 repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MKKTLLLVFCTLFLAACQPKADDIRVLSQEPSYSASLSSDGNIAIVATQSQGVQCWDLTTHSLKYQWVHGDLNTGVTATA
ISPNGEFAASLSRDSVALWTIADGKSRGWWSLPASGESVAVANNGALLIGLNDGSVMSLNAAKTALIKFLGHKERVNTVA
LSADGRIALSGSNDMQAILWQAQTGQPIHTWDVGSRVTKVALNDSGTLSFTNGSTNEAKIWDNTNGKLLNQLEIKRRQMT
FSAVRFAKQDTQLLTGTPAREVILWQRQTGKPIAKWQIALTKNSQNRGAVVYSVAIRDTNKVVSISSQGLVETWQE

Sequences:

>Translated_316_residues
MKKTLLLVFCTLFLAACQPKADDIRVLSQEPSYSASLSSDGNIAIVATQSQGVQCWDLTTHSLKYQWVHGDLNTGVTATA
ISPNGEFAASLSRDSVALWTIADGKSRGWWSLPASGESVAVANNGALLIGLNDGSVMSLNAAKTALIKFLGHKERVNTVA
LSADGRIALSGSNDMQAILWQAQTGQPIHTWDVGSRVTKVALNDSGTLSFTNGSTNEAKIWDNTNGKLLNQLEIKRRQMT
FSAVRFAKQDTQLLTGTPAREVILWQRQTGKPIAKWQIALTKNSQNRGAVVYSVAIRDTNKVVSISSQGLVETWQE
>Mature_316_residues
MKKTLLLVFCTLFLAACQPKADDIRVLSQEPSYSASLSSDGNIAIVATQSQGVQCWDLTTHSLKYQWVHGDLNTGVTATA
ISPNGEFAASLSRDSVALWTIADGKSRGWWSLPASGESVAVANNGALLIGLNDGSVMSLNAAKTALIKFLGHKERVNTVA
LSADGRIALSGSNDMQAILWQAQTGQPIHTWDVGSRVTKVALNDSGTLSFTNGSTNEAKIWDNTNGKLLNQLEIKRRQMT
FSAVRFAKQDTQLLTGTPAREVILWQRQTGKPIAKWQIALTKNSQNRGAVVYSVAIRDTNKVVSISSQGLVETWQE

Specific function: Unknown

COG id: COG2319

COG function: function code R; FOG: WD40 repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 15 WD repeats [H]

Homologues:

Organism=Homo sapiens, GI23199987, Length=246, Percent_Identity=24.390243902439, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI16554629, Length=246, Percent_Identity=26.0162601626016, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI16554627, Length=246, Percent_Identity=26.0162601626016, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI17864654, Length=245, Percent_Identity=26.1224489795918, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000767
- InterPro:   IPR020472
- InterPro:   IPR002182
- InterPro:   IPR015943
- InterPro:   IPR001680
- InterPro:   IPR011046
- InterPro:   IPR019782
- InterPro:   IPR019775
- InterPro:   IPR017986
- InterPro:   IPR019781 [H]

Pfam domain/function: PF00931 NB-ARC; PF00400 WD40 [H]

EC number: NA

Molecular weight: Translated: 34174; Mature: 34174

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50082 WD_REPEATS_2 ; PS50294 WD_REPEATS_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTLLLVFCTLFLAACQPKADDIRVLSQEPSYSASLSSDGNIAIVATQSQGVQCWDLTT
CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEECCCCCCEEEEEECCCCCEEEEEEE
HSLKYQWVHGDLNTGVTATAISPNGEFAASLSRDSVALWTIADGKSRGWWSLPASGESVA
CEEEEEEEECCCCCCEEEEEECCCCCEEEECCCCCEEEEEEECCCCCCEEECCCCCCEEE
VANNGALLIGLNDGSVMSLNAAKTALIKFLGHKERVNTVALSADGRIALSGSNDMQAILW
EECCCEEEEEECCCCEEEECHHHHHHHHHHCCCCCCEEEEEECCCEEEEECCCCCEEEEE
QAQTGQPIHTWDVGSRVTKVALNDSGTLSFTNGSTNEAKIWDNTNGKLLNQLEIKRRQMT
ECCCCCEEEEECCCCEEEEEEECCCCEEEECCCCCCCEEEEECCCCCEEHHHHHHHHHHH
FSAVRFAKQDTQLLTGTPAREVILWQRQTGKPIAKWQIALTKNSQNRGAVVYSVAIRDTN
HHHHHHHHCCCEEEECCCCCEEEEEECCCCCCEEEEEEEEEECCCCCCEEEEEEEEECCC
KVVSISSQGLVETWQE
EEEEECCCCCHHHCCC
>Mature Secondary Structure
MKKTLLLVFCTLFLAACQPKADDIRVLSQEPSYSASLSSDGNIAIVATQSQGVQCWDLTT
CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEECCCCCCEEEEEECCCCCEEEEEEE
HSLKYQWVHGDLNTGVTATAISPNGEFAASLSRDSVALWTIADGKSRGWWSLPASGESVA
CEEEEEEEECCCCCCEEEEEECCCCCEEEECCCCCEEEEEEECCCCCCEEECCCCCCEEE
VANNGALLIGLNDGSVMSLNAAKTALIKFLGHKERVNTVALSADGRIALSGSNDMQAILW
EECCCEEEEEECCCCEEEECHHHHHHHHHHCCCCCCEEEEEECCCEEEEECCCCCEEEEE
QAQTGQPIHTWDVGSRVTKVALNDSGTLSFTNGSTNEAKIWDNTNGKLLNQLEIKRRQMT
ECCCCCEEEEECCCCEEEEEEECCCCEEEECCCCCCCEEEEECCCCCEEHHHHHHHHHHH
FSAVRFAKQDTQLLTGTPAREVILWQRQTGKPIAKWQIALTKNSQNRGAVVYSVAIRDTN
HHHHHHHHCCCEEEECCCCCEEEEEECCCCCCEEEEEEEEEECCCCCCEEEEEEEEECCC
KVVSISSQGLVETWQE
EEEEECCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]