Click here to switch to the map view.

The map label for this gene is ycfM [C]

Identifier: 117919349

GI number: 117919349

Start: 1049406

End: 1050011

Strand: Reverse

Name: ycfM [C]

Synonym: Shewana3_0898

Alternate gene names: 117919349

Gene position: 1050011-1049406 (Counterclockwise)

Preceding gene: 117919350

Following gene: 117919348

Centisome position: 21.12

GC content: 45.05

Gene sequence:

>606_bases
ATGGAACTGACTATGAAACAATTTAAACTGATTTTTGTGCTGGCTGCCGTAATGGGTCTGGCTGCATGTCAATCGAAAGT
CGAGTATGGCGATGCCACAGAAGTGGAAACCGTTAACGAAAACTTTGGCTCAACGGATCTGCAAGCCATCGCCGCTAAGA
TGGTCGATAGCATGATGACTTTCCCACCTATCGTGGCCATGACGGCGAACAACCGCCCAATTTTGTTTGTCGATAGCATC
AAAAACAAAACCTCTGAGCATATCGATACTGAGTCAGTGACCGACTCTATCAGCAACAAGTTACTGCGCTCAGGCAAGTT
CCGTTTTATCGACATGACAAAAGTAGATTCAGTTCGTAAGCAACTGGATTACCAAAACAATACCGGTATGGTTGATCCAT
CAACCGCCATCAAGTTTGGCCGTCAAATCGGCGCCCAATACATGCTGTATGGCAACCTGTCTAGCATCGTTAAGCAAGAT
GGCAGCACCAAAGACGTTTACTACAAGATGACTATGCGTCTGATGGACTTAGAAACAGGCCTGATCGAATGGTCTGACGA
AAAAGAAATCCGTAAGACTAAGTCTAAGTCTTTCTTAGGCATGTAA

Upstream 100 bases:

>100_bases
ATTGATACTGGTAATTACACCCGAATTTATTCAATAATCATTTAACCTAGCGGTGAATGTTTGAATAAAACGAGTGTCAT
TAAGTTTTTACAATCACAAA

Downstream 100 bases:

>100_bases
TCCCGTTAAGCCCCATGGGCTAAAGCCGAAATACTTAAAAAAAGCCAGCATTTTCGCTGGCTTTTTTTTACATTTTTAAC
ATTGGTTATCCCTGCTAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: Membrane Lipoprotein Lipid Attachment Site

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MELTMKQFKLIFVLAAVMGLAACQSKVEYGDATEVETVNENFGSTDLQAIAAKMVDSMMTFPPIVAMTANNRPILFVDSI
KNKTSEHIDTESVTDSISNKLLRSGKFRFIDMTKVDSVRKQLDYQNNTGMVDPSTAIKFGRQIGAQYMLYGNLSSIVKQD
GSTKDVYYKMTMRLMDLETGLIEWSDEKEIRKTKSKSFLGM

Sequences:

>Translated_201_residues
MELTMKQFKLIFVLAAVMGLAACQSKVEYGDATEVETVNENFGSTDLQAIAAKMVDSMMTFPPIVAMTANNRPILFVDSI
KNKTSEHIDTESVTDSISNKLLRSGKFRFIDMTKVDSVRKQLDYQNNTGMVDPSTAIKFGRQIGAQYMLYGNLSSIVKQD
GSTKDVYYKMTMRLMDLETGLIEWSDEKEIRKTKSKSFLGM
>Mature_201_residues
MELTMKQFKLIFVLAAVMGLAACQSKVEYGDATEVETVNENFGSTDLQAIAAKMVDSMMTFPPIVAMTANNRPILFVDSI
KNKTSEHIDTESVTDSISNKLLRSGKFRFIDMTKVDSVRKQLDYQNNTGMVDPSTAIKFGRQIGAQYMLYGNLSSIVKQD
GSTKDVYYKMTMRLMDLETGLIEWSDEKEIRKTKSKSFLGM

Specific function: Unknown

COG id: COG3417

COG function: function code R; Collagen-binding surface adhesin SpaP (antigen I/II family)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787348, Length=119, Percent_Identity=27.7310924369748, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22592; Mature: 22592

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
7.0 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
7.0 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELTMKQFKLIFVLAAVMGLAACQSKVEYGDATEVETVNENFGSTDLQAIAAKMVDSMMT
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHC
FPPIVAMTANNRPILFVDSIKNKTSEHIDTESVTDSISNKLLRSGKFRFIDMTKVDSVRK
CCCEEEEECCCCCEEEEECCCCCHHHHCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHH
QLDYQNNTGMVDPSTAIKFGRQIGAQYMLYGNLSSIVKQDGSTKDVYYKMTMRLMDLETG
HHCCCCCCCCCCCHHHHHHHHHHCCCEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHCC
LIEWSDEKEIRKTKSKSFLGM
CCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MELTMKQFKLIFVLAAVMGLAACQSKVEYGDATEVETVNENFGSTDLQAIAAKMVDSMMT
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHC
FPPIVAMTANNRPILFVDSIKNKTSEHIDTESVTDSISNKLLRSGKFRFIDMTKVDSVRK
CCCEEEEECCCCCEEEEECCCCCHHHHCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHH
QLDYQNNTGMVDPSTAIKFGRQIGAQYMLYGNLSSIVKQDGSTKDVYYKMTMRLMDLETG
HHCCCCCCCCCCCHHHHHHHHHHCCCEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHCC
LIEWSDEKEIRKTKSKSFLGM
CCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA