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The map label for this gene is ybiS [H]

Identifier: 117919296

GI number: 117919296

Start: 977741

End: 978655

Strand: Reverse

Name: ybiS [H]

Synonym: Shewana3_0844

Alternate gene names: 117919296

Gene position: 978655-977741 (Counterclockwise)

Preceding gene: 117919297

Following gene: 117919294

Centisome position: 19.68

GC content: 48.42

Gene sequence:

>915_bases
ATGAGTATGCTTCGCACCACAGCTTTATTATTGACTCTGGTTTTTCCGAGTCTTTCCGCTTTAGCAACGGAATACCCTTT
ACCGTCTTCGAAGAGTCGGTTAGTTGGCGAGAACCTGTATTACACAGTGCCAGAGGGTAAACACACCCTCGAAGATATTG
CCGCTAAATTCCAACTCGGTCTAAGCAACTTGCTGGAAGCAAACCCTGGCGTGGATCCTTTCCTACCAACACCAGGCAGC
AAGCTATTAATTCCTCAACAGCTCATTCTGCCAAATGCGCCGCGTGAAGGCATTGTCATCAACGTCGCCGAAATGCGCCT
GTATTACTATCCAAAAGGTAAGAACACAGTTGAAGTACTGCCAATCGGTATTGGTCAGATTGGTAAAGATACCCCTGAAA
ACTGGGTCACCAGTGTTCAACGTAAACGCGCTAACCCAACTTGGACACCGACACCACGTATTCGTAAAGAATATGCGGCA
AGGGGTGAAATTCTGCCTGCGGTATGGCCAGCGGGTCCCGATAACCCAATGGGACTCTACGCGCTCTACATTGGTAACTT
GTATGCCATCCATGGTACCAACGCCAGCTTCGGTATTGGTTTACGTGTCAGCCAAGGCTGCGTGCGTTTACGCCACGATG
ACATTGAACACTTATTCAAAACGGTTCCAGTGGGTACCCGAGTACAATTTGTGAACCAACCGATTAAAGCGACCGAAGAG
CCAGATGGTAAGCGCTACTTAGCCGTGCACCAGCCACTGTCACGCACTATTGCCGAGTTTGAATCAGCAGAGCCAGTATC
TCTGACCTTACCGAAAGAAATCGCCAAGTTTATTGCTAAGGCCGATACCGATTCAGCAGTGATTAAAAAGCTGCTCGATG
AGCGTACAGGCGTGCCAACGATTATTAATCAGTAA

Upstream 100 bases:

>100_bases
CGCGCCAGTGCACTTTGCCCAACAATTTGCCGCCCTGTTTTGGGGAGAAAAAGCCGCGTAAAACAGGTTATTTTATTAAC
AGGAATCGTAGTATCCGCTT

Downstream 100 bases:

>100_bases
TAAGCGAATCAATAGAGCAGCGGTTGATACCGCTGCGCCCATAAAAATACCCGCCTAGGCGGGTATTTTTGTTTCAATCG
AAATAAGACTTATCAATCAA

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MSMLRTTALLLTLVFPSLSALATEYPLPSSKSRLVGENLYYTVPEGKHTLEDIAAKFQLGLSNLLEANPGVDPFLPTPGS
KLLIPQQLILPNAPREGIVINVAEMRLYYYPKGKNTVEVLPIGIGQIGKDTPENWVTSVQRKRANPTWTPTPRIRKEYAA
RGEILPAVWPAGPDNPMGLYALYIGNLYAIHGTNASFGIGLRVSQGCVRLRHDDIEHLFKTVPVGTRVQFVNQPIKATEE
PDGKRYLAVHQPLSRTIAEFESAEPVSLTLPKEIAKFIAKADTDSAVIKKLLDERTGVPTIINQ

Sequences:

>Translated_304_residues
MSMLRTTALLLTLVFPSLSALATEYPLPSSKSRLVGENLYYTVPEGKHTLEDIAAKFQLGLSNLLEANPGVDPFLPTPGS
KLLIPQQLILPNAPREGIVINVAEMRLYYYPKGKNTVEVLPIGIGQIGKDTPENWVTSVQRKRANPTWTPTPRIRKEYAA
RGEILPAVWPAGPDNPMGLYALYIGNLYAIHGTNASFGIGLRVSQGCVRLRHDDIEHLFKTVPVGTRVQFVNQPIKATEE
PDGKRYLAVHQPLSRTIAEFESAEPVSLTLPKEIAKFIAKADTDSAVIKKLLDERTGVPTIINQ
>Mature_303_residues
SMLRTTALLLTLVFPSLSALATEYPLPSSKSRLVGENLYYTVPEGKHTLEDIAAKFQLGLSNLLEANPGVDPFLPTPGSK
LLIPQQLILPNAPREGIVINVAEMRLYYYPKGKNTVEVLPIGIGQIGKDTPENWVTSVQRKRANPTWTPTPRIRKEYAAR
GEILPAVWPAGPDNPMGLYALYIGNLYAIHGTNASFGIGLRVSQGCVRLRHDDIEHLFKTVPVGTRVQFVNQPIKATEEP
DGKRYLAVHQPLSRTIAEFESAEPVSLTLPKEIAKFIAKADTDSAVIKKLLDERTGVPTIINQ

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787040, Length=286, Percent_Identity=63.986013986014, Blast_Score=377, Evalue=1e-106,
Organism=Escherichia coli, GI1788299, Length=303, Percent_Identity=60.0660066006601, Blast_Score=366, Evalue=1e-102,
Organism=Escherichia coli, GI1787356, Length=284, Percent_Identity=53.5211267605634, Blast_Score=296, Evalue=1e-81,
Organism=Escherichia coli, GI1787968, Length=307, Percent_Identity=46.5798045602606, Blast_Score=252, Evalue=2e-68,

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 33482; Mature: 33351

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMLRTTALLLTLVFPSLSALATEYPLPSSKSRLVGENLYYTVPEGKHTLEDIAAKFQLG
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCEEEECCCCCHHHHHHHHHHHHH
LSNLLEANPGVDPFLPTPGSKLLIPQQLILPNAPREGIVINVAEMRLYYYPKGKNTVEVL
HHHHHHCCCCCCCCCCCCCCCEECCHHHHCCCCCCCCEEEEEEEEEEEEECCCCCEEEEE
PIGIGQIGKDTPENWVTSVQRKRANPTWTPTPRIRKEYAARGEILPAVWPAGPDNPMGLY
EECCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCEEE
ALYIGNLYAIHGTNASFGIGLRVSQGCVRLRHDDIEHLFKTVPVGTRVQFVNQPIKATEE
EEEECCEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCC
PDGKRYLAVHQPLSRTIAEFESAEPVSLTLPKEIAKFIAKADTDSAVIKKLLDERTGVPT
CCCCEEEEECCHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCHHHHHHHHHHHCCCCH
IINQ
HCCC
>Mature Secondary Structure 
SMLRTTALLLTLVFPSLSALATEYPLPSSKSRLVGENLYYTVPEGKHTLEDIAAKFQLG
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCEEEECCCCCHHHHHHHHHHHHH
LSNLLEANPGVDPFLPTPGSKLLIPQQLILPNAPREGIVINVAEMRLYYYPKGKNTVEVL
HHHHHHCCCCCCCCCCCCCCCEECCHHHHCCCCCCCCEEEEEEEEEEEEECCCCCEEEEE
PIGIGQIGKDTPENWVTSVQRKRANPTWTPTPRIRKEYAARGEILPAVWPAGPDNPMGLY
EECCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCEEE
ALYIGNLYAIHGTNASFGIGLRVSQGCVRLRHDDIEHLFKTVPVGTRVQFVNQPIKATEE
EEEECCEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCC
PDGKRYLAVHQPLSRTIAEFESAEPVSLTLPKEIAKFIAKADTDSAVIKKLLDERTGVPT
CCCCEEEEECCHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCHHHHHHHHHHHCCCCH
IINQ
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]