Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
---|---|
Accession | NC_008577 |
Length | 4,972,204 |
Click here to switch to the map view.
The map label for this gene is 117919080
Identifier: 117919080
GI number: 117919080
Start: 736683
End: 737444
Strand: Direct
Name: 117919080
Synonym: Shewana3_0627
Alternate gene names: NA
Gene position: 736683-737444 (Clockwise)
Preceding gene: 117919079
Following gene: 117919081
Centisome position: 14.82
GC content: 40.16
Gene sequence:
>762_bases ATGAGCACAAAAATCAACCTCACATTAGTTGTCTATGGACTGGCTTTATTCTCAGGGATTTCTTATCTCTGGGGATTTTG GATTAAGTACGACATCAATATACTTTCCTACGTAGCTCTAACTGAGATAGTGAAAGCTTCTGTTTATCCAGCTCTCCCAG CCATAGGTATCCTTGCGGCTTACTCTGCAATGGATGGGGTTAACTCAATGTCAAAAAAACAACATGATGAGTACATGGAA GCTGGTGGTTTCTTTAAAGGTTTCACCTATTTCTTTAAGTTTTACTGCGTTTCAATGATTCTTCTAGGCTTAGGTAGCTC GGCATATACCGCAATAACCGAGACAGGGTACATGCGCTTAAGGGGTCTTTATCCATTAGTATCTCTAATCCTGTTTTTAT ACATTATCTTCAGCAATAAGTATTTACTAAGCATACCTGTAAACTTAAGGGTTTTTGTTGTTTCGATATTTTGTTTCTTG CCTACTGCATCATTCAGTAAAGGGTATTCAAATGGTGAGGTGGCAATGGACCATGATGCGCCAGGTTACTATGTGGTTAG CAGTGGTTACTGCTCATCCACCGAGAAAGAGAAATTTCGGTACATTGGTGTGTTAGGCAGTAGGCTATTTAGCCTATCCT CAAAGGATAATAGTATCTGTATTTCAAAATCCGAAGACTTTAAATTGGTAAGGTACAACGAACCAGCTCTTAACAAACAG CTCAACGAGGACGCAGCAAAAAGCGCTGCGCCTGTTAGCTGA
Upstream 100 bases:
>100_bases AGGCATCTAACAAATGGTTCAAATCACTCGCTCCGCTCGCTGGGACGGGCTAAAGCCCGCCCCTTAACCAAACGTTAAGA GCCCGCGTTAATAGGAAACT
Downstream 100 bases:
>100_bases GCGTTATCTCCATAGAAATTTTAATCCGAAACTGAAAAGTTAGAGCAAAGGAGCTATCACGCTTTTGTCCCAAAGCATGC TTCGTATTTCTTTAAAACTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 253; Mature: 252
Protein sequence:
>253_residues MSTKINLTLVVYGLALFSGISYLWGFWIKYDINILSYVALTEIVKASVYPALPAIGILAAYSAMDGVNSMSKKQHDEYME AGGFFKGFTYFFKFYCVSMILLGLGSSAYTAITETGYMRLRGLYPLVSLILFLYIIFSNKYLLSIPVNLRVFVVSIFCFL PTASFSKGYSNGEVAMDHDAPGYYVVSSGYCSSTEKEKFRYIGVLGSRLFSLSSKDNSICISKSEDFKLVRYNEPALNKQ LNEDAAKSAAPVS
Sequences:
>Translated_253_residues MSTKINLTLVVYGLALFSGISYLWGFWIKYDINILSYVALTEIVKASVYPALPAIGILAAYSAMDGVNSMSKKQHDEYME AGGFFKGFTYFFKFYCVSMILLGLGSSAYTAITETGYMRLRGLYPLVSLILFLYIIFSNKYLLSIPVNLRVFVVSIFCFL PTASFSKGYSNGEVAMDHDAPGYYVVSSGYCSSTEKEKFRYIGVLGSRLFSLSSKDNSICISKSEDFKLVRYNEPALNKQ LNEDAAKSAAPVS >Mature_252_residues STKINLTLVVYGLALFSGISYLWGFWIKYDINILSYVALTEIVKASVYPALPAIGILAAYSAMDGVNSMSKKQHDEYMEA GGFFKGFTYFFKFYCVSMILLGLGSSAYTAITETGYMRLRGLYPLVSLILFLYIIFSNKYLLSIPVNLRVFVVSIFCFLP TASFSKGYSNGEVAMDHDAPGYYVVSSGYCSSTEKEKFRYIGVLGSRLFSLSSKDNSICISKSEDFKLVRYNEPALNKQL NEDAAKSAAPVS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28112; Mature: 27981
Theoretical pI: Translated: 8.72; Mature: 8.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTKINLTLVVYGLALFSGISYLWGFWIKYDINILSYVALTEIVKASVYPALPAIGILAA CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YSAMDGVNSMSKKQHDEYMEAGGFFKGFTYFFKFYCVSMILLGLGSSAYTAITETGYMRL HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHH RGLYPLVSLILFLYIIFSNKYLLSIPVNLRVFVVSIFCFLPTASFSKGYSNGEVAMDHDA HHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCHHHCCCCCCCEEECCCC PGYYVVSSGYCSSTEKEKFRYIGVLGSRLFSLSSKDNSICISKSEDFKLVRYNEPALNKQ CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEECCCHHHHH LNEDAAKSAAPVS HHHHHHHCCCCCC >Mature Secondary Structure STKINLTLVVYGLALFSGISYLWGFWIKYDINILSYVALTEIVKASVYPALPAIGILAA CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YSAMDGVNSMSKKQHDEYMEAGGFFKGFTYFFKFYCVSMILLGLGSSAYTAITETGYMRL HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHH RGLYPLVSLILFLYIIFSNKYLLSIPVNLRVFVVSIFCFLPTASFSKGYSNGEVAMDHDA HHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCHHHCCCCCCCEEECCCC PGYYVVSSGYCSSTEKEKFRYIGVLGSRLFSLSSKDNSICISKSEDFKLVRYNEPALNKQ CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEECCCHHHHH LNEDAAKSAAPVS HHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA