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The map label for this gene is aer [H]

Identifier: 117919035

GI number: 117919035

Start: 681888

End: 683462

Strand: Direct

Name: aer [H]

Synonym: Shewana3_0582

Alternate gene names: 117919035

Gene position: 681888-683462 (Clockwise)

Preceding gene: 117919033

Following gene: 117919037

Centisome position: 13.71

GC content: 51.75

Gene sequence:

>1575_bases
ATGAGAAAGAATTTACCAGTCACACAGCGGGAATACGATTATCCAGCGGATTGGATTTTGTTGTCGACGACCGACACCAA
AAGTCATATTACCTATGCCAATCCCTCATTTTGTACCGTTGCGGGATATGAACTCAGTGGCATGTTGGGCCTGCCCCACA
ATATGGTGCGTCACCCTGATATGCCACCCCAAGCTTTTGAAGATCTTTGGAAAACAATCCGTAAGGGTGAGCCCTGGAAA
GGCATAGTCAAAAACCGCTGCGCCAATGGTGACCATTATTGGGTCGATGCCTATGTGTCGCCGATTGTGGTGAATGGTCA
GGTGGCCGAGTTTCAGTCGGTACGTACTAAACCCAGCCGTGAACAGATCAACAGAGCTGAAGCGGCCTACGCCGAGTTAA
ATAAAAACGGTCAAGTTAAGGCGCTAAAACGCACCTTAGAGATGCCGACTAAGTTGGCATTGCTCGTCTTGGTTGCTCTA
TTGCCCATGTTGTATTTGGCGCTGCAGATTGGAGTGGTGGGATTTGTGGGACTCGCCATTAGTGCACTCGCGCTGTTTAT
CGGCGGCAATCTGATCCTAGGCCGCTATCGGACGTTGGTCGCTAAAGCGAAGAAAATCTACGACAACCCTTTGATGGCAC
ACATTTATACGGGGCAATCCGACGATTTAGGGGCTATCGATCTCGCGCTGCAAATGCAAAATTCAGAGCTTAAATCCGTG
CTCGGCCGCGCGCGCGATTCCTGTGATAACGTCAGTCAGCAAGCGAAAATCTCTGCGGCTAAAGGTGAAGAAATTCAAGG
GACAAGCCAGTCACAACTGGCCGAGATTGAACAAGTCGCCACGGCCATGCAGCAGATGACGGCAACTCTAGGGGATATGT
CCTCAAATTGCGCCGATGCGGCGAGTGCGTCACAGATGGCGTCACTGCAGACAATCAACGGCGATAAAACCGTTGTCAGT
ACTATTCAGTCGATTCAGGCAATGGCGCAGCAGTTGCAGGAAACCTCGCAGGTGATCACTGAGTTAGAAGGGCATAGCCG
GGATATAGGCAGAGTGCTGGATGTGATCCAAGGTATTGCCGAGCAAACGAACTTACTGGCGCTCAACGCTGCGATTGAAG
CGGCGCGGGCGGGCGAACAGGGGCGGGGCTTTGCCGTGGTTGCCGATGAGGTGCGGGCGTTAGCGCAGCGTACTCATGAT
GCCACCAAAGAAATCCACACTATGATCAACCTGTTACAACAAGGAACTCACAAGGCGGTGCGCAGCATGCAAGAGGGTGT
GGATGCGGCTGGCGAATGTATTACGACGGCGGATCTTGCGGGCGCGGCGCTGCGTACCATACGTGAAGCGATCACTACCA
TTACCGATATGACCCACCATATTGCCAGTGCGGTGGAGGAGCAATCGAGCGTAGCGAACGAGATGAACCGCAGTGTGGTG
AATGTGTCGCAATTTACCCATTCTAGCCATCAACTGGGTTGCGAAATGGTGAGCCTTAATGATGAAGTGATAGGCGAGAT
GAACTCCCATACTGTGCTAGTCGGACAGTTTTTAAAGCGCAGTTTTAAAGTCTAA

Upstream 100 bases:

>100_bases
GGAGAGATGATTTTAGCGGTAATGGATCATTGGACACGATCAAGGATGGATAACTCATGGACGATGGAATAATAAATTCA
CAATAAATCCAAGGGTTATC

Downstream 100 bases:

>100_bases
CCTTTGTCGCAATCGTTAGTGGCTTAAGTAGATAGTGACTTAATTAGGATAGTGGCTTAATCGAAAGGCAATCAGTACTC
TGATTGCCTTTTGTTTTTGC

Product: methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 524; Mature: 524

Protein sequence:

>524_residues
MRKNLPVTQREYDYPADWILLSTTDTKSHITYANPSFCTVAGYELSGMLGLPHNMVRHPDMPPQAFEDLWKTIRKGEPWK
GIVKNRCANGDHYWVDAYVSPIVVNGQVAEFQSVRTKPSREQINRAEAAYAELNKNGQVKALKRTLEMPTKLALLVLVAL
LPMLYLALQIGVVGFVGLAISALALFIGGNLILGRYRTLVAKAKKIYDNPLMAHIYTGQSDDLGAIDLALQMQNSELKSV
LGRARDSCDNVSQQAKISAAKGEEIQGTSQSQLAEIEQVATAMQQMTATLGDMSSNCADAASASQMASLQTINGDKTVVS
TIQSIQAMAQQLQETSQVITELEGHSRDIGRVLDVIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAQRTHD
ATKEIHTMINLLQQGTHKAVRSMQEGVDAAGECITTADLAGAALRTIREAITTITDMTHHIASAVEEQSSVANEMNRSVV
NVSQFTHSSHQLGCEMVSLNDEVIGEMNSHTVLVGQFLKRSFKV

Sequences:

>Translated_524_residues
MRKNLPVTQREYDYPADWILLSTTDTKSHITYANPSFCTVAGYELSGMLGLPHNMVRHPDMPPQAFEDLWKTIRKGEPWK
GIVKNRCANGDHYWVDAYVSPIVVNGQVAEFQSVRTKPSREQINRAEAAYAELNKNGQVKALKRTLEMPTKLALLVLVAL
LPMLYLALQIGVVGFVGLAISALALFIGGNLILGRYRTLVAKAKKIYDNPLMAHIYTGQSDDLGAIDLALQMQNSELKSV
LGRARDSCDNVSQQAKISAAKGEEIQGTSQSQLAEIEQVATAMQQMTATLGDMSSNCADAASASQMASLQTINGDKTVVS
TIQSIQAMAQQLQETSQVITELEGHSRDIGRVLDVIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAQRTHD
ATKEIHTMINLLQQGTHKAVRSMQEGVDAAGECITTADLAGAALRTIREAITTITDMTHHIASAVEEQSSVANEMNRSVV
NVSQFTHSSHQLGCEMVSLNDEVIGEMNSHTVLVGQFLKRSFKV
>Mature_524_residues
MRKNLPVTQREYDYPADWILLSTTDTKSHITYANPSFCTVAGYELSGMLGLPHNMVRHPDMPPQAFEDLWKTIRKGEPWK
GIVKNRCANGDHYWVDAYVSPIVVNGQVAEFQSVRTKPSREQINRAEAAYAELNKNGQVKALKRTLEMPTKLALLVLVAL
LPMLYLALQIGVVGFVGLAISALALFIGGNLILGRYRTLVAKAKKIYDNPLMAHIYTGQSDDLGAIDLALQMQNSELKSV
LGRARDSCDNVSQQAKISAAKGEEIQGTSQSQLAEIEQVATAMQQMTATLGDMSSNCADAASASQMASLQTINGDKTVVS
TIQSIQAMAQQLQETSQVITELEGHSRDIGRVLDVIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAQRTHD
ATKEIHTMINLLQQGTHKAVRSMQEGVDAAGECITTADLAGAALRTIREAITTITDMTHHIASAVEEQSSVANEMNRSVV
NVSQFTHSSHQLGCEMVSLNDEVIGEMNSHTVLVGQFLKRSFKV

Specific function: Signal transducer for aerotaxis. The aerotactic response is the accumulation of cells around air bubbles. The nature of the sensory stimulus detected by this protein is the proton motive force or cellular redox state. It uses a FAD prosthetic group as a r

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1789453, Length=506, Percent_Identity=32.2134387351779, Blast_Score=231, Evalue=7e-62,
Organism=Escherichia coli, GI2367378, Length=320, Percent_Identity=30.9375, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1787690, Length=402, Percent_Identity=28.3582089552239, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI1788195, Length=264, Percent_Identity=33.7121212121212, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1788194, Length=233, Percent_Identity=36.480686695279, Blast_Score=112, Evalue=7e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF08447 PAS_3 [H]

EC number: NA

Molecular weight: Translated: 56956; Mature: 56956

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKNLPVTQREYDYPADWILLSTTDTKSHITYANPSFCTVAGYELSGMLGLPHNMVRHPD
CCCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCCEEEEECCCCCCCCCCCHHHHCCCC
MPPQAFEDLWKTIRKGEPWKGIVKNRCANGDHYWVDAYVSPIVVNGQVAEFQSVRTKPSR
CCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCEEEEEECCCEEECCCHHHHHHHCCCCCH
EQINRAEAAYAELNKNGQVKALKRTLEMPTKLALLVLVALLPMLYLALQIGVVGFVGLAI
HHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SALALFIGGNLILGRYRTLVAKAKKIYDNPLMAHIYTGQSDDLGAIDLALQMQNSELKSV
HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHEECCCHHHHHH
LGRARDSCDNVSQQAKISAAKGEEIQGTSQSQLAEIEQVATAMQQMTATLGDMSSNCADA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
ASASQMASLQTINGDKTVVSTIQSIQAMAQQLQETSQVITELEGHSRDIGRVLDVIQGIA
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
EQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAQRTHDATKEIHTMINLLQQGTHKAV
HHHHEEHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSMQEGVDAAGECITTADLAGAALRTIREAITTITDMTHHIASAVEEQSSVANEMNRSVV
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NVSQFTHSSHQLGCEMVSLNDEVIGEMNSHTVLVGQFLKRSFKV
HHHHHHCCHHHHCCEEEECCHHHHCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MRKNLPVTQREYDYPADWILLSTTDTKSHITYANPSFCTVAGYELSGMLGLPHNMVRHPD
CCCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCCEEEEECCCCCCCCCCCHHHHCCCC
MPPQAFEDLWKTIRKGEPWKGIVKNRCANGDHYWVDAYVSPIVVNGQVAEFQSVRTKPSR
CCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCEEEEEECCCEEECCCHHHHHHHCCCCCH
EQINRAEAAYAELNKNGQVKALKRTLEMPTKLALLVLVALLPMLYLALQIGVVGFVGLAI
HHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SALALFIGGNLILGRYRTLVAKAKKIYDNPLMAHIYTGQSDDLGAIDLALQMQNSELKSV
HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHEECCCHHHHHH
LGRARDSCDNVSQQAKISAAKGEEIQGTSQSQLAEIEQVATAMQQMTATLGDMSSNCADA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
ASASQMASLQTINGDKTVVSTIQSIQAMAQQLQETSQVITELEGHSRDIGRVLDVIQGIA
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
EQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAQRTHDATKEIHTMINLLQQGTHKAV
HHHHEEHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSMQEGVDAAGECITTADLAGAALRTIREAITTITDMTHHIASAVEEQSSVANEMNRSVV
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NVSQFTHSSHQLGCEMVSLNDEVIGEMNSHTVLVGQFLKRSFKV
HHHHHHCCHHHHCCEEEECCHHHHCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503; 9190831; 9380671 [H]