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The map label for this gene is rraB [H]

Identifier: 117919022

GI number: 117919022

Start: 661848

End: 662255

Strand: Direct

Name: rraB [H]

Synonym: Shewana3_0569

Alternate gene names: 117919022

Gene position: 661848-662255 (Clockwise)

Preceding gene: 117919021

Following gene: 117919025

Centisome position: 13.31

GC content: 47.55

Gene sequence:

>408_bases
ATGTCTATTGAAAGTCAATTAAAAGCCCAACTTGCCGAGAATCGTGACATAGTGCAAGCCCTGCTTGACGATGGCTCAGA
GCCAGATGCGGAATACACCATTGAGCACCATTTCTCATCTAGCAACTTCGACCGCTTAGAAAAAGCCGCCGTTGATGCAT
TCAAACTCGGTTTTGAAGTCAACGACGCCGAAGAGATGGAGCTGGAAGATGGCTCTGTCATTTTCTGTTTTGATGCTATC
GCTTACCACAAGCTGGAAGTGGCTTTATTGGATAAAGCGACCGAGCAGTTACTGCAACTCGCAGCTAAGCAAAAAGTGGA
TTACGACGGTTGGGGCACTTACTTCGTTGGTGACGATATCGACGACGAAGAAGGTGACGACGAAGAAGATGACGGTTTCC
CGCACTAA

Upstream 100 bases:

>100_bases
ATAAATCGTGAAGCGGCAACATTAATGGGTAAAACTCTCGAAGGCGATGACGTATAATAGCGCCAATTTGAGCCAGTTTT
ACCTTAACGGAGACAAATCC

Downstream 100 bases:

>100_bases
TTCGCGACCATTGAGATTTCAGTAACAAAAAGCCCATCATCGATGGGCTTTTTGGTTTCAGTAACCACTGGTTTGTGCGG
TGTGCAGGACGCTACAGTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MSIESQLKAQLAENRDIVQALLDDGSEPDAEYTIEHHFSSSNFDRLEKAAVDAFKLGFEVNDAEEMELEDGSVIFCFDAI
AYHKLEVALLDKATEQLLQLAAKQKVDYDGWGTYFVGDDIDDEEGDDEEDDGFPH

Sequences:

>Translated_135_residues
MSIESQLKAQLAENRDIVQALLDDGSEPDAEYTIEHHFSSSNFDRLEKAAVDAFKLGFEVNDAEEMELEDGSVIFCFDAI
AYHKLEVALLDKATEQLLQLAAKQKVDYDGWGTYFVGDDIDDEEGDDEEDDGFPH
>Mature_134_residues
SIESQLKAQLAENRDIVQALLDDGSEPDAEYTIEHHFSSSNFDRLEKAAVDAFKLGFEVNDAEEMELEDGSVIFCFDAIA
YHKLEVALLDKATEQLLQLAAKQKVDYDGWGTYFVGDDIDDEEGDDEEDDGFPH

Specific function: Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome [H]

COG id: COG3076

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraB family [H]

Homologues:

Organism=Escherichia coli, GI1790704, Length=115, Percent_Identity=53.9130434782609, Blast_Score=128, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009671
- InterPro:   IPR016716 [H]

Pfam domain/function: PF06877 DUF1260 [H]

EC number: NA

Molecular weight: Translated: 15168; Mature: 15037

Theoretical pI: Translated: 3.74; Mature: 3.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIESQLKAQLAENRDIVQALLDDGSEPDAEYTIEHHFSSSNFDRLEKAAVDAFKLGFEV
CCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCC
NDAEEMELEDGSVIFCFDAIAYHKLEVALLDKATEQLLQLAAKQKVDYDGWGTYFVGDDI
CCCCCEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC
DDEEGDDEEDDGFPH
CCCCCCCCCCCCCCC
>Mature Secondary Structure 
SIESQLKAQLAENRDIVQALLDDGSEPDAEYTIEHHFSSSNFDRLEKAAVDAFKLGFEV
CHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCC
NDAEEMELEDGSVIFCFDAIAYHKLEVALLDKATEQLLQLAAKQKVDYDGWGTYFVGDDI
CCCCCEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC
DDEEGDDEEDDGFPH
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA