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The map label for this gene is zntR [H]

Identifier: 117918899

GI number: 117918899

Start: 517722

End: 518195

Strand: Direct

Name: zntR [H]

Synonym: Shewana3_0442

Alternate gene names: 117918899

Gene position: 517722-518195 (Clockwise)

Preceding gene: 117918894

Following gene: 117918900

Centisome position: 10.41

GC content: 52.53

Gene sequence:

>474_bases
ATGTACCGAATTGGTGAGTTAGCCGATTTATGCGAGGTTAAGGCCGACACCCTCAGATTCTATGAGAAACACGGCCTGCT
TTCGCCTTCGAGCCGTACCGACTCTGGCTATCGGGTCTATACCGATGCCGACGCGGCGCGGCTGCGTTTTATTCTGCGGG
CGAAGGCGGTGGGTTTTACCTTAAGTGAAATCAGTGAGTTGTTGTCTATCGACCTCGACAAATCCAACTGGGCCTGTGCC
GATGTTAAGGGCATGGTCGATCTCAAGCTGGCGCAGGTGCAAGCCAAAATTGCCGAGTTATTGCATTTTCAAACCAGTTT
ACAGAGTCTGTCGGATGCCTGCTGCGGCGGGCCGCGTAGCGCCGAACATTGCTCGATTTTAGAAGCGCTAGAGTCGAGTA
CCGAACAAGTACGCGTTGAGCATGACCATGGCGCTACAGATTGCACCACAACCCTAGATAAGTCAGGGAATTAA

Upstream 100 bases:

>100_bases
CCCTTGACCTTGGAGTAGGCTCTAAGGTTTATACTCGCTTCATCATATTGATTGTCAGTGTTGCTTGAGATGATTCGAGT
AAAACTGCAAAGGATTAACT

Downstream 100 bases:

>100_bases
TTATGTTATTGAAGAATTTTATCGATCTGTTTTTAGATTCCGCCCCTTGGCTATTGCTCGGCTTGATTCTGGCGGGCTTA
CTCAAAGTGTTTGTGCCTAT

Product: zinc-responsive transcriptional regulator

Products: NA

Alternate protein names: Zn(II)-responsive regulator of zntA [H]

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MYRIGELADLCEVKADTLRFYEKHGLLSPSSRTDSGYRVYTDADAARLRFILRAKAVGFTLSEISELLSIDLDKSNWACA
DVKGMVDLKLAQVQAKIAELLHFQTSLQSLSDACCGGPRSAEHCSILEALESSTEQVRVEHDHGATDCTTTLDKSGN

Sequences:

>Translated_157_residues
MYRIGELADLCEVKADTLRFYEKHGLLSPSSRTDSGYRVYTDADAARLRFILRAKAVGFTLSEISELLSIDLDKSNWACA
DVKGMVDLKLAQVQAKIAELLHFQTSLQSLSDACCGGPRSAEHCSILEALESSTEQVRVEHDHGATDCTTTLDKSGN
>Mature_157_residues
MYRIGELADLCEVKADTLRFYEKHGLLSPSSRTDSGYRVYTDADAARLRFILRAKAVGFTLSEISELLSIDLDKSNWACA
DVKGMVDLKLAQVQAKIAELLHFQTSLQSLSDACCGGPRSAEHCSILEALESSTEQVRVEHDHGATDCTTTLDKSGN

Specific function: Zinc-responsive transcriptional regulator of zntA [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789687, Length=138, Percent_Identity=50, Blast_Score=145, Evalue=1e-36,
Organism=Escherichia coli, GI1786695, Length=127, Percent_Identity=33.8582677165354, Blast_Score=76, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR015358
- InterPro:   IPR011788 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 17214; Mature: 17214

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRIGELADLCEVKADTLRFYEKHGLLSPSSRTDSGYRVYTDADAARLRFILRAKAVGFT
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCC
LSEISELLSIDLDKSNWACADVKGMVDLKLAQVQAKIAELLHFQTSLQSLSDACCGGPRS
HHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
AEHCSILEALESSTEQVRVEHDHGATDCTTTLDKSGN
CHHHHHHHHHHCCHHHEEEECCCCCCCHHHCCCCCCC
>Mature Secondary Structure
MYRIGELADLCEVKADTLRFYEKHGLLSPSSRTDSGYRVYTDADAARLRFILRAKAVGFT
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCC
LSEISELLSIDLDKSNWACADVKGMVDLKLAQVQAKIAELLHFQTSLQSLSDACCGGPRS
HHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
AEHCSILEALESSTEQVRVEHDHGATDCTTTLDKSGN
CHHHHHHHHHHCCHHHEEEECCCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]