| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is aceE [H]
Identifier: 117918883
GI number: 117918883
Start: 485256
End: 487922
Strand: Direct
Name: aceE [H]
Synonym: Shewana3_0426
Alternate gene names: 117918883
Gene position: 485256-487922 (Clockwise)
Preceding gene: 117918882
Following gene: 117918884
Centisome position: 9.76
GC content: 48.71
Gene sequence:
>2667_bases ATGTCTGAAGATATGCTACAAGACTTAGATCCGTTAGAGACTCAGGAATGGGTTGACGCCCTGCAAGCTGTATTAGAACA GGAAGGCCCTGAACGCGCCCATTTCTTATTAGAGAAACTGATCGATAAAGCCCGTCGCAATGGCACGCACTTGCCTTACA CTGCGACCACGGCCTATTTGAACACCATTCCAGCGGGTCAAGAGCCGCACATGCCAGGCAACCAAGAGATGGAACGTCGC ATTCGCGCTATCATCCGTTGGAACGCCTTAGCTATGGTGCTGCGTGGTTCTAAGAAAGATTTAGAGTTAGGCGGCCATAT TTCGAGTTTCGCGTCGAGCGCAACCATTTATGACGTATGCTTCAACCACTTCTTCCGCGCGCCAAACGAGAAAGACGGCG GCGACTTAGTGTATTTCCAAGGCCATATCGCCCCAGGTATCTACGCGCGTTCATTCTTGGAAGGTCGTTTAACTGAAGAC CAACTGGCTAACTTCCGTCAAGAAGTGGATGGCAAAGGTTTATCTTCTTATCCGCACCCTAAGTTGATGCCTGACTACTG GCAATTCCCAACGGTTTCTATGGGTCTGGGTCCAATCCAAGCGATTTACCAAGCTCGCTTCTTAAAGTACCTGACTGACC GTGGTCTGAAAGATTGTTCTGAGCAAACCGTATACTGCTTCTTAGGTGACGGTGAGTGTGACGAGCCAGAAGCCTTAGGT GCGATTGGTTTAGCTGCCCGTGAAGAATTAGATAACTTAGTCTTTATCATCAACTGTAACCTGCAACGTCTGGACGGCCC AGTACGCGGTAACGGTAAGATCATCCAAGAACTGGAAGGTGAATTCCGCGGCGCTGGCTGGGAAGTCGTGAAAGTGATTT GGGGTCGTTACTGGGATCCATTATTGGCCCGTGATACCAGTGGTAAGTTACTGCAGTTAATGGAAGAAACCGTTGACGGT GAATACCAAAACTGTAAAGCCAAAGGTGGCGCTTATACTCGCGAACACTTCTTCGGCAAATACCCAGAAACCGCCGAAAT GGTGGCGAACATGTCAGATGATGACATTTGGCGCTTAAACCGTGGTGGTCATGACCCAGTTAAAGTGTACGCGGCATTAG ACCATGCACGTAAGACTAAAGGTCGCCCAACGGTGATCCTGGCGAAAACCGTTAAAGGTTACGGCCTAGGTGATGCGGGT GAAGGTAAGAACATCGCCCACAACGTGAAGAAAATGGGTATCGAGTCTATCCGTTACTTCCGCGATCGTTTCAATATCCC CATTCCAGACGATCAATTAGAAGATCTGCCGTTCTACCACCCAGGTCCAGATTCGGAAGAAGTGAAGTACATGATGAGCC GTCGTGCCGCACTACATGGTAGCGTGCCACAACGTCGTCAGAAGTTCAGCGAAGAGCTGGAAATTCCTTCACTGAAGATT TTCGACTCGATTTTGCAGGGTTCTAACGGCCGTGAAATTTCGTCAACGATGGCGTTTGTTCGCGTACTGACTGCACTGTT AAAAGACAAGAAAATTGGCAAAAACATCGTGCCAATTATTCCTGACGAAGCGCGTACCTTCGGTATGGAAGGCCTGTTCC GTCAAGTGGGTATTTATGCTCACGAAGGCCAAAAATACGTCCCGCAAGACTCTGACCAAGTGGCTTACTACCGTGAAGAT AAAACTGGTCAAGTGCTGCAGGAAGGTATTAACGAACTGGGTGCAATGTCATCTTGGGTAGCTGCTGCGACCAGCTACTC AGTCAACGATACACCGATGATTCCATTCTACATCTACTACTCAATGTTCGGTTTCCAACGTATTGGCGACATGGCATGGG CTGCGGGTGATATGCGTGCACGTGGCTTCTTAGTCGGTGGTACTTCAGGCCGTACAACACTGAACGGTGAAGGTTTACAG CATCAGGACGGTCACAGTCACGTACTGGCTAACACTATTCCTAACTGTATTACCTACGATCCAACTTACGGTTATGAAAT TGCCGTTATCGTTCAAGATGGTATTCGTCGCATGTACGGCGAAAAACAAGAAGATATCTTCTACTACCTGACCACAATGA ACGAAAACTATATTCAGCCTGAAATGCCAGAAGGTGCCGAGGAAGGTATCGTTAAAGGTATCTACAAGTTGGAAACGGTT AGCGGTTCGGGTAAAGGCAAAGTTCAGTTAATGAGCTGTGGCACCATTCTTGAGCAAACCCGCAAAGCGGCTCAAGCACT GGCAAAAGACTTCGGCATCACTGCCGACGTATTCAGCGTCACCAGCTTCAACGAACTGACTCGCGATGGTCAAGCGGTTG AGCGTTGGAACATGCTGCACCCAACTGAAACGCCAAAACAAGCGTATATCAGCCAAGTGATTTCAAGTGATGCTCCGGCA ATCGCTGCGACTGACTACATGAAGATCTACGGCGAGCAGTTACGTGCATTTATGCCAACCGATTATAAAGTGTTAGGTAC TGACGGTTTCGGTCGTTCAGACAGCCGTGACAACCTGCGTCACCACTTCGAAGTGGACGCTAAGTTCATCGTTATCGCGG CACTGAAATCTCTGGTTGATCGTAAAGAGCTGCCTGTTGATGTGTTAGCGAATGCCATCAAGGAATACGGCATCGACGCT GACAAGATCAATCCACAGTACGCGTAA
Upstream 100 bases:
>100_bases GTTTAAAGAGTGGCGCTTAAGTTCCCGACTTTAGCAATCGCTAAAGCGGAATATGCCGCAAACACCATTCATCATCATGT ATATAGAGAAGGACAGTGTC
Downstream 100 bases:
>100_bases GAGGCAATAAAAATGGCTGAATTAAAAGAAGTTTTTGTTCCTGATATCGGCGGCGATGAAGTACAGGTTATCGAAATCTG TGCTTCTGTGGGCGATACCT
Product: pyruvate dehydrogenase subunit E1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 888; Mature: 887
Protein sequence:
>888_residues MSEDMLQDLDPLETQEWVDALQAVLEQEGPERAHFLLEKLIDKARRNGTHLPYTATTAYLNTIPAGQEPHMPGNQEMERR IRAIIRWNALAMVLRGSKKDLELGGHISSFASSATIYDVCFNHFFRAPNEKDGGDLVYFQGHIAPGIYARSFLEGRLTED QLANFRQEVDGKGLSSYPHPKLMPDYWQFPTVSMGLGPIQAIYQARFLKYLTDRGLKDCSEQTVYCFLGDGECDEPEALG AIGLAAREELDNLVFIINCNLQRLDGPVRGNGKIIQELEGEFRGAGWEVVKVIWGRYWDPLLARDTSGKLLQLMEETVDG EYQNCKAKGGAYTREHFFGKYPETAEMVANMSDDDIWRLNRGGHDPVKVYAALDHARKTKGRPTVILAKTVKGYGLGDAG EGKNIAHNVKKMGIESIRYFRDRFNIPIPDDQLEDLPFYHPGPDSEEVKYMMSRRAALHGSVPQRRQKFSEELEIPSLKI FDSILQGSNGREISSTMAFVRVLTALLKDKKIGKNIVPIIPDEARTFGMEGLFRQVGIYAHEGQKYVPQDSDQVAYYRED KTGQVLQEGINELGAMSSWVAAATSYSVNDTPMIPFYIYYSMFGFQRIGDMAWAAGDMRARGFLVGGTSGRTTLNGEGLQ HQDGHSHVLANTIPNCITYDPTYGYEIAVIVQDGIRRMYGEKQEDIFYYLTTMNENYIQPEMPEGAEEGIVKGIYKLETV SGSGKGKVQLMSCGTILEQTRKAAQALAKDFGITADVFSVTSFNELTRDGQAVERWNMLHPTETPKQAYISQVISSDAPA IAATDYMKIYGEQLRAFMPTDYKVLGTDGFGRSDSRDNLRHHFEVDAKFIVIAALKSLVDRKELPVDVLANAIKEYGIDA DKINPQYA
Sequences:
>Translated_888_residues MSEDMLQDLDPLETQEWVDALQAVLEQEGPERAHFLLEKLIDKARRNGTHLPYTATTAYLNTIPAGQEPHMPGNQEMERR IRAIIRWNALAMVLRGSKKDLELGGHISSFASSATIYDVCFNHFFRAPNEKDGGDLVYFQGHIAPGIYARSFLEGRLTED QLANFRQEVDGKGLSSYPHPKLMPDYWQFPTVSMGLGPIQAIYQARFLKYLTDRGLKDCSEQTVYCFLGDGECDEPEALG AIGLAAREELDNLVFIINCNLQRLDGPVRGNGKIIQELEGEFRGAGWEVVKVIWGRYWDPLLARDTSGKLLQLMEETVDG EYQNCKAKGGAYTREHFFGKYPETAEMVANMSDDDIWRLNRGGHDPVKVYAALDHARKTKGRPTVILAKTVKGYGLGDAG EGKNIAHNVKKMGIESIRYFRDRFNIPIPDDQLEDLPFYHPGPDSEEVKYMMSRRAALHGSVPQRRQKFSEELEIPSLKI FDSILQGSNGREISSTMAFVRVLTALLKDKKIGKNIVPIIPDEARTFGMEGLFRQVGIYAHEGQKYVPQDSDQVAYYRED KTGQVLQEGINELGAMSSWVAAATSYSVNDTPMIPFYIYYSMFGFQRIGDMAWAAGDMRARGFLVGGTSGRTTLNGEGLQ HQDGHSHVLANTIPNCITYDPTYGYEIAVIVQDGIRRMYGEKQEDIFYYLTTMNENYIQPEMPEGAEEGIVKGIYKLETV SGSGKGKVQLMSCGTILEQTRKAAQALAKDFGITADVFSVTSFNELTRDGQAVERWNMLHPTETPKQAYISQVISSDAPA IAATDYMKIYGEQLRAFMPTDYKVLGTDGFGRSDSRDNLRHHFEVDAKFIVIAALKSLVDRKELPVDVLANAIKEYGIDA DKINPQYA >Mature_887_residues SEDMLQDLDPLETQEWVDALQAVLEQEGPERAHFLLEKLIDKARRNGTHLPYTATTAYLNTIPAGQEPHMPGNQEMERRI RAIIRWNALAMVLRGSKKDLELGGHISSFASSATIYDVCFNHFFRAPNEKDGGDLVYFQGHIAPGIYARSFLEGRLTEDQ LANFRQEVDGKGLSSYPHPKLMPDYWQFPTVSMGLGPIQAIYQARFLKYLTDRGLKDCSEQTVYCFLGDGECDEPEALGA IGLAAREELDNLVFIINCNLQRLDGPVRGNGKIIQELEGEFRGAGWEVVKVIWGRYWDPLLARDTSGKLLQLMEETVDGE YQNCKAKGGAYTREHFFGKYPETAEMVANMSDDDIWRLNRGGHDPVKVYAALDHARKTKGRPTVILAKTVKGYGLGDAGE GKNIAHNVKKMGIESIRYFRDRFNIPIPDDQLEDLPFYHPGPDSEEVKYMMSRRAALHGSVPQRRQKFSEELEIPSLKIF DSILQGSNGREISSTMAFVRVLTALLKDKKIGKNIVPIIPDEARTFGMEGLFRQVGIYAHEGQKYVPQDSDQVAYYREDK TGQVLQEGINELGAMSSWVAAATSYSVNDTPMIPFYIYYSMFGFQRIGDMAWAAGDMRARGFLVGGTSGRTTLNGEGLQH QDGHSHVLANTIPNCITYDPTYGYEIAVIVQDGIRRMYGEKQEDIFYYLTTMNENYIQPEMPEGAEEGIVKGIYKLETVS GSGKGKVQLMSCGTILEQTRKAAQALAKDFGITADVFSVTSFNELTRDGQAVERWNMLHPTETPKQAYISQVISSDAPAI AATDYMKIYGEQLRAFMPTDYKVLGTDGFGRSDSRDNLRHHFEVDAKFIVIAALKSLVDRKELPVDVLANAIKEYGIDAD KINPQYA
Specific function: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components:pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydroge
COG id: COG2609
COG function: function code C; Pyruvate dehydrogenase complex, dehydrogenase (E1) component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786304, Length=890, Percent_Identity=66.7415730337079, Blast_Score=1280, Evalue=0.0,
Paralogues:
None
Copy number: 1140 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 400 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 6,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004660 - InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005474 [H]
Pfam domain/function: PF00456 Transketolase_N [H]
EC number: =1.2.4.1 [H]
Molecular weight: Translated: 99564; Mature: 99433
Theoretical pI: Translated: 5.29; Mature: 5.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEDMLQDLDPLETQEWVDALQAVLEQEGPERAHFLLEKLIDKARRNGTHLPYTATTAYL CCHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHH NTIPAGQEPHMPGNQEMERRIRAIIRWNALAMVLRGSKKDLELGGHISSFASSATIYDVC HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHH FNHFFRAPNEKDGGDLVYFQGHIAPGIYARSFLEGRLTEDQLANFRQEVDGKGLSSYPHP HHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCC KLMPDYWQFPTVSMGLGPIQAIYQARFLKYLTDRGLKDCSEQTVYCFLGDGECDEPEALG CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHCCCCCEEEEEECCCCCCCCHHHH AIGLAAREELDNLVFIINCNLQRLDGPVRGNGKIIQELEGEFRGAGWEVVKVIWGRYWDP HHHHHHHHHHCCEEEEEECCHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCH LLARDTSGKLLQLMEETVDGEYQNCKAKGGAYTREHFFGKYPETAEMVANMSDDDIWRLN HHHCCCCHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHCCCCCCHHHHHHCCCCCCEEECC RGGHDPVKVYAALDHARKTKGRPTVILAKTVKGYGLGDAGEGKNIAHNVKKMGIESIRYF CCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH RDRFNIPIPDDQLEDLPFYHPGPDSEEVKYMMSRRAALHGSVPQRRQKFSEELEIPSLKI HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHH FDSILQGSNGREISSTMAFVRVLTALLKDKKIGKNIVPIIPDEARTFGMEGLFRQVGIYA HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCEEE HEGQKYVPQDSDQVAYYREDKTGQVLQEGINELGAMSSWVAAATSYSVNDTPMIPFYIYY ECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH SMFGFQRIGDMAWAAGDMRARGFLVGGTSGRTTLNGEGLQHQDGHSHVLANTIPNCITYD HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCEEHHHHCCCCEECC PTYGYEIAVIVQDGIRRMYGEKQEDIFYYLTTMNENYIQPEMPEGAEEGIVKGIYKLETV CCCCCEEEEEEHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHEEEE SGSGKGKVQLMSCGTILEQTRKAAQALAKDFGITADVFSVTSFNELTRDGQAVERWNMLH CCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHCCCC PTETPKQAYISQVISSDAPAIAATDYMKIYGEQLRAFMPTDYKVLGTDGFGRSDSRDNLR CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHH HHFEVDAKFIVIAALKSLVDRKELPVDVLANAIKEYGIDADKINPQYA HHEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHCCCCCCC >Mature Secondary Structure SEDMLQDLDPLETQEWVDALQAVLEQEGPERAHFLLEKLIDKARRNGTHLPYTATTAYL CHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHH NTIPAGQEPHMPGNQEMERRIRAIIRWNALAMVLRGSKKDLELGGHISSFASSATIYDVC HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHH FNHFFRAPNEKDGGDLVYFQGHIAPGIYARSFLEGRLTEDQLANFRQEVDGKGLSSYPHP HHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCC KLMPDYWQFPTVSMGLGPIQAIYQARFLKYLTDRGLKDCSEQTVYCFLGDGECDEPEALG CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHCCCCCEEEEEECCCCCCCCHHHH AIGLAAREELDNLVFIINCNLQRLDGPVRGNGKIIQELEGEFRGAGWEVVKVIWGRYWDP HHHHHHHHHHCCEEEEEECCHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCH LLARDTSGKLLQLMEETVDGEYQNCKAKGGAYTREHFFGKYPETAEMVANMSDDDIWRLN HHHCCCCHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHCCCCCCHHHHHHCCCCCCEEECC RGGHDPVKVYAALDHARKTKGRPTVILAKTVKGYGLGDAGEGKNIAHNVKKMGIESIRYF CCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH RDRFNIPIPDDQLEDLPFYHPGPDSEEVKYMMSRRAALHGSVPQRRQKFSEELEIPSLKI HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHH FDSILQGSNGREISSTMAFVRVLTALLKDKKIGKNIVPIIPDEARTFGMEGLFRQVGIYA HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCEEE HEGQKYVPQDSDQVAYYREDKTGQVLQEGINELGAMSSWVAAATSYSVNDTPMIPFYIYY ECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH SMFGFQRIGDMAWAAGDMRARGFLVGGTSGRTTLNGEGLQHQDGHSHVLANTIPNCITYD HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCEEHHHHCCCCEECC PTYGYEIAVIVQDGIRRMYGEKQEDIFYYLTTMNENYIQPEMPEGAEEGIVKGIYKLETV CCCCCEEEEEEHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHEEEE SGSGKGKVQLMSCGTILEQTRKAAQALAKDFGITADVFSVTSFNELTRDGQAVERWNMLH CCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHCCCC PTETPKQAYISQVISSDAPAIAATDYMKIYGEQLRAFMPTDYKVLGTDGFGRSDSRDNLR CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHH HHFEVDAKFIVIAALKSLVDRKELPVDVLANAIKEYGIDADKINPQYA HHEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]