Click here to switch to the map view.

The map label for this gene is rbn [C]

Identifier: 117918768

GI number: 117918768

Start: 349274

End: 350287

Strand: Direct

Name: rbn [C]

Synonym: Shewana3_0311

Alternate gene names: 117918768

Gene position: 349274-350287 (Clockwise)

Preceding gene: 117918763

Following gene: 117918769

Centisome position: 7.02

GC content: 50.49

Gene sequence:

>1014_bases
GTGACTAAGAAGATAGAACTGGCACAAATTCAAGTCTTATTCCTCGGGATCTGGCGCTTCCTGCTGCATTTACGCCAGCG
TTTAGTGGAAGATCAAATCAATATCCGCGCCGGCCACTTAGCCTATGTCACCCTGTTATCCCTTGTGCCTATGGTGGCCG
TGACTATGTCGATGCTGTCGGCTTTCCCTGTGTTTAAGGGGATCCGTGGCCAAATCGAAGCCTTCGTTTATGAGAATTTT
CTGCCCGCGGCGGGCGATACGGTACAAGTCTATATTAATGAATTTGTTGGCAATGCCTCTAAGGGCACGGCAGTGGGGAT
CGCGGCTCTGGTCGTGGTGGCGATTATGCTGATCTCCGCCATCGATAAATCGCTGAATAATATTTGGCGTACTAAGGAAA
AGCGTTCAGTGGTGGTGGCCTTTTCCATGTATTGGATGGTGATTACCTTAGGCCCAGTGCTGGTGGGCGCGAGCCTAGTG
GCGACTTCCTACGTGGTGTCATTAAAACTGTTTGAGGGCGACGCCTTATCTGGGGTGATGCCGCTATTTATCGAGCGCTT
GCCTATGCTGTTTTCGGTGGCAGCGTTTTTACTGCTCTATATGGTGGTGCCGAATCAAAAGGTGAAGTTTTGGCATGCGC
TATTAGGCGCGGTAGTGGCGGCCTTACTGTTCGAGTTGGGGAAAAAAGGCTTTGCCCTGTATGTGACTAAATTCCCAAGT
TATGAGGCCATTTACGGCGCATTGGCGACCATCCCTATTCTGTTTGTTTGGGTCTATTTATCTTGGATGATAGTGTTGCT
GGGCGCCGAAATTACCGCGGCCATGCCTGAGTATTTGGACTATGAGTCTAGCAGCAATATCAACGAAACCAATCTCGATG
GTGAGCCTTTAGCGGCGCAGAATACACCCGCCGTGGAGCCAGAAACCATATCTGCCCAATCAAGCCAAGAGGTTGATACG
ATGGGTGAACTTGCCGCAAACGCGCCGCAATCGACTACACTGGATAAGCCGTAG

Upstream 100 bases:

>100_bases
CAGATCCTTGTTGTGACATCAATTCACTCCTTAGACTTGTAAATTAAGTGTTTATTGTACGAAGATAACGAGTCAATACC
AACAGAATCAAGAGAAACCC

Downstream 100 bases:

>100_bases
CTAAGTTGTCATCCACCAAGACATTTAACGAGCCTTATCCCGCCAATGATCACTGACGCCCATCAGCTTGCTCCTTTTAT
CCGCCGTGATTGGTTGATGA

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MTKKIELAQIQVLFLGIWRFLLHLRQRLVEDQINIRAGHLAYVTLLSLVPMVAVTMSMLSAFPVFKGIRGQIEAFVYENF
LPAAGDTVQVYINEFVGNASKGTAVGIAALVVVAIMLISAIDKSLNNIWRTKEKRSVVVAFSMYWMVITLGPVLVGASLV
ATSYVVSLKLFEGDALSGVMPLFIERLPMLFSVAAFLLLYMVVPNQKVKFWHALLGAVVAALLFELGKKGFALYVTKFPS
YEAIYGALATIPILFVWVYLSWMIVLLGAEITAAMPEYLDYESSSNINETNLDGEPLAAQNTPAVEPETISAQSSQEVDT
MGELAANAPQSTTLDKP

Sequences:

>Translated_337_residues
MTKKIELAQIQVLFLGIWRFLLHLRQRLVEDQINIRAGHLAYVTLLSLVPMVAVTMSMLSAFPVFKGIRGQIEAFVYENF
LPAAGDTVQVYINEFVGNASKGTAVGIAALVVVAIMLISAIDKSLNNIWRTKEKRSVVVAFSMYWMVITLGPVLVGASLV
ATSYVVSLKLFEGDALSGVMPLFIERLPMLFSVAAFLLLYMVVPNQKVKFWHALLGAVVAALLFELGKKGFALYVTKFPS
YEAIYGALATIPILFVWVYLSWMIVLLGAEITAAMPEYLDYESSSNINETNLDGEPLAAQNTPAVEPETISAQSSQEVDT
MGELAANAPQSTTLDKP
>Mature_336_residues
TKKIELAQIQVLFLGIWRFLLHLRQRLVEDQINIRAGHLAYVTLLSLVPMVAVTMSMLSAFPVFKGIRGQIEAFVYENFL
PAAGDTVQVYINEFVGNASKGTAVGIAALVVVAIMLISAIDKSLNNIWRTKEKRSVVVAFSMYWMVITLGPVLVGASLVA
TSYVVSLKLFEGDALSGVMPLFIERLPMLFSVAAFLLLYMVVPNQKVKFWHALLGAVVAALLFELGKKGFALYVTKFPSY
EAIYGALATIPILFVWVYLSWMIVLLGAEITAAMPEYLDYESSSNINETNLDGEPLAAQNTPAVEPETISAQSSQEVDTM
GELAANAPQSTTLDKP

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family

Homologues:

Organism=Escherichia coli, GI1790319, Length=280, Percent_Identity=50.3571428571429, Blast_Score=277, Evalue=8e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y311_SHESA (A0KRY5)

Other databases:

- EMBL:   CP000469
- RefSeq:   YP_867960.1
- STRING:   A0KRY5
- GeneID:   4479470
- GenomeReviews:   CP000469_GR
- KEGG:   shn:Shewana3_0311
- NMPDR:   fig|94122.5.peg.484
- eggNOG:   COG1295
- HOGENOM:   HBG451793
- OMA:   ELAQIQV
- PhylomeDB:   A0KRY5
- ProtClustDB:   PRK01637
- BioCyc:   SSP94122:SHEWANA3_0311-MONOMER
- HAMAP:   MF_00672
- InterPro:   IPR017039
- InterPro:   IPR004664
- PIRSF:   PIRSF035875
- TIGRFAMs:   TIGR00765

Pfam domain/function: PF03631 Ribonuclease_BN

EC number: 3.1.-.- [C]

Molecular weight: Translated: 36922; Mature: 36791

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1395be9c)-; HASH(0x154b4be4)-; HASH(0x14add818)-; HASH(0x15471480)-; HASH(0x13f16cd8)-; HASH(0x150a0264)-; HASH(0x14865ee4)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKIELAQIQVLFLGIWRFLLHLRQRLVEDQINIRAGHLAYVTLLSLVPMVAVTMSMLS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
AFPVFKGIRGQIEAFVYENFLPAAGDTVQVYINEFVGNASKGTAVGIAALVVVAIMLISA
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
IDKSLNNIWRTKEKRSVVVAFSMYWMVITLGPVLVGASLVATSYVVSLKLFEGDALSGVM
HHHHHHHHHHCHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHH
PLFIERLPMLFSVAAFLLLYMVVPNQKVKFWHALLGAVVAALLFELGKKGFALYVTKFPS
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC
YEAIYGALATIPILFVWVYLSWMIVLLGAEITAAMPEYLDYESSSNINETNLDGEPLAAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
NTPAVEPETISAQSSQEVDTMGELAANAPQSTTLDKP
CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCH
>Mature Secondary Structure 
TKKIELAQIQVLFLGIWRFLLHLRQRLVEDQINIRAGHLAYVTLLSLVPMVAVTMSMLS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
AFPVFKGIRGQIEAFVYENFLPAAGDTVQVYINEFVGNASKGTAVGIAALVVVAIMLISA
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
IDKSLNNIWRTKEKRSVVVAFSMYWMVITLGPVLVGASLVATSYVVSLKLFEGDALSGVM
HHHHHHHHHHCHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHH
PLFIERLPMLFSVAAFLLLYMVVPNQKVKFWHALLGAVVAALLFELGKKGFALYVTKFPS
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC
YEAIYGALATIPILFVWVYLSWMIVLLGAEITAAMPEYLDYESSSNINETNLDGEPLAAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
NTPAVEPETISAQSSQEVDTMGELAANAPQSTTLDKP
CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA