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The map label for this gene is yedE [H]

Identifier: 117918567

GI number: 117918567

Start: 125630

End: 126844

Strand: Direct

Name: yedE [H]

Synonym: Shewana3_0109

Alternate gene names: 117918567

Gene position: 125630-126844 (Clockwise)

Preceding gene: 117918566

Following gene: 117918568

Centisome position: 2.53

GC content: 51.19

Gene sequence:

>1215_bases
ATGACATGGCAAGAATTTAAACAACAATATTTAGTCCGTTTTTGGGCACCTATGCCTGCGGTTATCGCCGCCGGTATCCT
TTCTACTTACTATTTTGGGTTAACTGGTACTTTTTGGGCTGTTACGGGGGAATTTACGCGCTGGGGCGGGCACTTACTGC
AATTGGTTGGTGCAAATCCTGAAACTTGGGGTTATTTCAAGGTGATTGGTTTACAGGGTTCTCCCTTAGACCGTATCGAC
GGCATGATGATCATCGGCATGTTTGGTGGTTGTATTGCGGCGGCGCTGTGGGCGAATAACGTCAAACTGCGTATGCCACA
GAGCCGTATCCGCATCGCTCAGGCGTTAATCGGCGGCATTATTGCTGGCTTTGGGGCGCGCTTGGCGATGGGCTGTAACT
TAGCAGCCTTCTTCACTGGGATTCCGCAGTTTTCCTTACATGCGTGGTTTTTTGCCCTGGCGACGGCTGCGGGTTCTTAC
TTTGGTGCGCGCTTTACGCTACTGCCTATGTTTCGCATTCCGGTGAAATTGAAGAAAGTCGATAAGGCGACCTCGGTTAA
ACAGGATGAAAACCAAGCGAGACGACGTTTTCGTATCGGCATGTTAGTGTTCGCGGCCATTATCGGCTGGGGATTACTGA
CAATGTTCAATGCGCCTAAGCTGGGTATCGCTATGCTCTGCGGTGTGGGTTTTGGTCTGTTGATTGAGCGGGCACAAATC
TGCTTTACCTCGGCATTTCGTGATATGTGGATCACCGGGCGCACCCATATGGCCAAGGCAATTATTCTCGGTATGGCGGT
GAGTGCCATCGGGATTTATAGCTATGTGCAATTAGGTGTGCCGCCCAAAATCATGTGGGCCGGCCCGAATGCGGTGATTG
GTGGCCTGCTGTTTGGATTTGGCATTGTACTGGCGGGTGGTTGTGAGACGGGTTGGATGTATCGCGCCGTCGAAGGCCAA
GTGCATTTCTGGTGGGTTGGTTTAGGTAACGTACTGGGTTCAACCCTGCTGGCCTATTACTGGGATGATTTAGCCCAGCC
ATTAGCCACAAGTTGGGACAAGGTTAACTTGCTTTCAAGCTTTGGTGATAAGGGCGGTTTATTGCTGACTTATCTGCTGC
TGGCGCTGTCGTTTGCGGCCATGTTGCTGTGGGAAAAACGTTTCTTTGCCCGTAAAGCGAAGCGGGATGAACAATTGATC
GCGGAGGCGGCGTAA

Upstream 100 bases:

>100_bases
TCTTTAGCGCCTTATTTTTAAGGGATGGTGCCTTGCTTGTGTGGCAACGGGTATAAGCCTCGTGCTTATTTTTTATAGTC
TCGTTCATTAGGGTAATGAC

Downstream 100 bases:

>100_bases
TGAGTCAATATATTCCAGATTATCAACTCGATATGGTGGGCGAGCCGTGCCCTTACCCCGCAGTGGCAACCCTTGAGGCC
ATGCCGACACTGAAGCCAGG

Product: putative inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MTWQEFKQQYLVRFWAPMPAVIAAGILSTYYFGLTGTFWAVTGEFTRWGGHLLQLVGANPETWGYFKVIGLQGSPLDRID
GMMIIGMFGGCIAAALWANNVKLRMPQSRIRIAQALIGGIIAGFGARLAMGCNLAAFFTGIPQFSLHAWFFALATAAGSY
FGARFTLLPMFRIPVKLKKVDKATSVKQDENQARRRFRIGMLVFAAIIGWGLLTMFNAPKLGIAMLCGVGFGLLIERAQI
CFTSAFRDMWITGRTHMAKAIILGMAVSAIGIYSYVQLGVPPKIMWAGPNAVIGGLLFGFGIVLAGGCETGWMYRAVEGQ
VHFWWVGLGNVLGSTLLAYYWDDLAQPLATSWDKVNLLSSFGDKGGLLLTYLLLALSFAAMLLWEKRFFARKAKRDEQLI
AEAA

Sequences:

>Translated_404_residues
MTWQEFKQQYLVRFWAPMPAVIAAGILSTYYFGLTGTFWAVTGEFTRWGGHLLQLVGANPETWGYFKVIGLQGSPLDRID
GMMIIGMFGGCIAAALWANNVKLRMPQSRIRIAQALIGGIIAGFGARLAMGCNLAAFFTGIPQFSLHAWFFALATAAGSY
FGARFTLLPMFRIPVKLKKVDKATSVKQDENQARRRFRIGMLVFAAIIGWGLLTMFNAPKLGIAMLCGVGFGLLIERAQI
CFTSAFRDMWITGRTHMAKAIILGMAVSAIGIYSYVQLGVPPKIMWAGPNAVIGGLLFGFGIVLAGGCETGWMYRAVEGQ
VHFWWVGLGNVLGSTLLAYYWDDLAQPLATSWDKVNLLSSFGDKGGLLLTYLLLALSFAAMLLWEKRFFARKAKRDEQLI
AEAA
>Mature_403_residues
TWQEFKQQYLVRFWAPMPAVIAAGILSTYYFGLTGTFWAVTGEFTRWGGHLLQLVGANPETWGYFKVIGLQGSPLDRIDG
MMIIGMFGGCIAAALWANNVKLRMPQSRIRIAQALIGGIIAGFGARLAMGCNLAAFFTGIPQFSLHAWFFALATAAGSYF
GARFTLLPMFRIPVKLKKVDKATSVKQDENQARRRFRIGMLVFAAIIGWGLLTMFNAPKLGIAMLCGVGFGLLIERAQIC
FTSAFRDMWITGRTHMAKAIILGMAVSAIGIYSYVQLGVPPKIMWAGPNAVIGGLLFGFGIVLAGGCETGWMYRAVEGQV
HFWWVGLGNVLGSTLLAYYWDDLAQPLATSWDKVNLLSSFGDKGGLLLTYLLLALSFAAMLLWEKRFFARKAKRDEQLIA
EAA

Specific function: Unknown

COG id: COG2391

COG function: function code R; Predicted transporter component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0394 family [H]

Homologues:

Organism=Escherichia coli, GI1788238, Length=404, Percent_Identity=79.7029702970297, Blast_Score=627, Evalue=0.0,
Organism=Escherichia coli, GI1788323, Length=102, Percent_Identity=40.1960784313725, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007272 [H]

Pfam domain/function: PF04143 DUF395 [H]

EC number: NA

Molecular weight: Translated: 44411; Mature: 44280

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTWQEFKQQYLVRFWAPMPAVIAAGILSTYYFGLTGTFWAVTGEFTRWGGHLLQLVGANP
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCC
ETWGYFKVIGLQGSPLDRIDGMMIIGMFGGCIAAALWANNVKLRMPQSRIRIAQALIGGI
CCCEEEEEEECCCCCHHHHCCEEHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHH
IAGFGARLAMGCNLAAFFTGIPQFSLHAWFFALATAAGSYFGARFTLLPMFRIPVKLKKV
HHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHH
DKATSVKQDENQARRRFRIGMLVFAAIIGWGLLTMFNAPKLGIAMLCGVGFGLLIERAQI
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
CFTSAFRDMWITGRTHMAKAIILGMAVSAIGIYSYVQLGVPPKIMWAGPNAVIGGLLFGF
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHH
GIVLAGGCETGWMYRAVEGQVHFWWVGLGNVLGSTLLAYYWDDLAQPLATSWDKVNLLSS
HHHEECCCCCCCEEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
FGDKGGLLLTYLLLALSFAAMLLWEKRFFARKAKRDEQLIAEAA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC
>Mature Secondary Structure 
TWQEFKQQYLVRFWAPMPAVIAAGILSTYYFGLTGTFWAVTGEFTRWGGHLLQLVGANP
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCC
ETWGYFKVIGLQGSPLDRIDGMMIIGMFGGCIAAALWANNVKLRMPQSRIRIAQALIGGI
CCCEEEEEEECCCCCHHHHCCEEHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHH
IAGFGARLAMGCNLAAFFTGIPQFSLHAWFFALATAAGSYFGARFTLLPMFRIPVKLKKV
HHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHH
DKATSVKQDENQARRRFRIGMLVFAAIIGWGLLTMFNAPKLGIAMLCGVGFGLLIERAQI
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
CFTSAFRDMWITGRTHMAKAIILGMAVSAIGIYSYVQLGVPPKIMWAGPNAVIGGLLFGF
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHH
GIVLAGGCETGWMYRAVEGQVHFWWVGLGNVLGSTLLAYYWDDLAQPLATSWDKVNLLSS
HHHEECCCCCCCEEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
FGDKGGLLLTYLLLALSFAAMLLWEKRFFARKAKRDEQLIAEAA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8371104; 9097040; 9278503 [H]