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The map label for this gene is fdhD [H]

Identifier: 117918566

GI number: 117918566

Start: 124669

End: 125505

Strand: Direct

Name: fdhD [H]

Synonym: Shewana3_0108

Alternate gene names: 117918566

Gene position: 124669-125505 (Clockwise)

Preceding gene: 117918565

Following gene: 117918567

Centisome position: 2.51

GC content: 50.9

Gene sequence:

>837_bases
ATGGAATATCATTCACACGCCGTGGTTACTGAAAGAAAGGTGACCCTTTTAGAACAGGGGCAGGCTTCCGAGTTAACCGA
TTATGTGGCTAACGAGGTGCGAGTGGCACTGGTGTATAACGGCATCGCCCACACTGTGATGCTCGCCAGCCCAGAAAATC
TCGAAGAGTTCGCGATTGGCTTTACCTTGTCGGAGCGGATTGTTTCCCATGTGAATGAAATCAAAGGTGTGGATCTGGAG
TTTACTCCCGAAGGCGTGCTCATTCAGGTAGAGATCACCCAAAGATGCTTTATGGAACTCAAGCAGCAGCGGCGTAATAT
GGCAGGGCGCACGGGTTGCGGACTCTGTGGTGTTGCGCAGCTAGAAGAGGCGGTTAAACCCGTTATTCGTGTGGACTCGG
ACGCCAGATTTAATATCGATCATCTGCAGCTCGCCTTAGAGCAGATCAAAGAGAATCAACATCACTTTAAGCTTACGGGG
GCGACCCATGCCGCCATGGGCTTAGATGCGGAAGGACAAATCATCGCCGCCTTCGAGGACATAGGTCGGCACATCGCACT
GGATAAATTAATCGGTGGATTTTCAATGCGTAAGGCAGAGCGACCTGTCGCCGTGTTGCTCACTAGCCGCGCCAGTTTCG
AAATGGTGCAAAAGGCCGCCAGTGCCAATATCCAAATTCTGTTTGCTATGTCCGCCGTGACTTCACTGGCGTTGGAATTA
GCAGAGAAAAGCAACATCACGCTTATCGGTTTTTGCCGTAATGGCAGAGCCACGCTCTACACCCATAGCTATCGGTTATC
GGGAGTAAATCGTGGTTGTCTAGCGAAAGCCATCTAA

Upstream 100 bases:

>100_bases
TCAAGTGCATTCGTATTTAGTTAGCCACTTTGTGACTTGAGTCGAACTTTATTGGCAAACCAATTGTTTTTATTTGAATT
TATGATTTTAGAGGGTCGCT

Downstream 100 bases:

>100_bases
AGCGTGTCGCCACACAATTAAGATTCTTTAGCGCCTTATTTTTAAGGGATGGTGCCTTGCTTGTGTGGCAACGGGTATAA
GCCTCGTGCTTATTTTTTAT

Product: formate dehydrogenase accessory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MEYHSHAVVTERKVTLLEQGQASELTDYVANEVRVALVYNGIAHTVMLASPENLEEFAIGFTLSERIVSHVNEIKGVDLE
FTPEGVLIQVEITQRCFMELKQQRRNMAGRTGCGLCGVAQLEEAVKPVIRVDSDARFNIDHLQLALEQIKENQHHFKLTG
ATHAAMGLDAEGQIIAAFEDIGRHIALDKLIGGFSMRKAERPVAVLLTSRASFEMVQKAASANIQILFAMSAVTSLALEL
AEKSNITLIGFCRNGRATLYTHSYRLSGVNRGCLAKAI

Sequences:

>Translated_278_residues
MEYHSHAVVTERKVTLLEQGQASELTDYVANEVRVALVYNGIAHTVMLASPENLEEFAIGFTLSERIVSHVNEIKGVDLE
FTPEGVLIQVEITQRCFMELKQQRRNMAGRTGCGLCGVAQLEEAVKPVIRVDSDARFNIDHLQLALEQIKENQHHFKLTG
ATHAAMGLDAEGQIIAAFEDIGRHIALDKLIGGFSMRKAERPVAVLLTSRASFEMVQKAASANIQILFAMSAVTSLALEL
AEKSNITLIGFCRNGRATLYTHSYRLSGVNRGCLAKAI
>Mature_278_residues
MEYHSHAVVTERKVTLLEQGQASELTDYVANEVRVALVYNGIAHTVMLASPENLEEFAIGFTLSERIVSHVNEIKGVDLE
FTPEGVLIQVEITQRCFMELKQQRRNMAGRTGCGLCGVAQLEEAVKPVIRVDSDARFNIDHLQLALEQIKENQHHFKLTG
ATHAAMGLDAEGQIIAAFEDIGRHIALDKLIGGFSMRKAERPVAVLLTSRASFEMVQKAASANIQILFAMSAVTSLALEL
AEKSNITLIGFCRNGRATLYTHSYRLSGVNRGCLAKAI

Specific function: Necessary for formate dehydrogenase activity [H]

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family [H]

Homologues:

Organism=Escherichia coli, GI1790329, Length=242, Percent_Identity=50.8264462809917, Blast_Score=247, Evalue=6e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003786 [H]

Pfam domain/function: PF02634 FdhD-NarQ [H]

EC number: NA

Molecular weight: Translated: 30578; Mature: 30578

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYHSHAVVTERKVTLLEQGQASELTDYVANEVRVALVYNGIAHTVMLASPENLEEFAIG
CCCCCCEEEEHHHHHEECCCCHHHHHHHHHHHEEEEEEECCHHHEEEEECCCCHHHHHHH
FTLSERIVSHVNEIKGVDLEFTPEGVLIQVEITQRCFMELKQQRRNMAGRTGCGLCGVAQ
HHHHHHHHHHHHHHCCCCEEECCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
LEEAVKPVIRVDSDARFNIDHLQLALEQIKENQHHFKLTGATHAAMGLDAEGQIIAAFED
HHHHHHHHEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCCEEEEHHH
IGRHIALDKLIGGFSMRKAERPVAVLLTSRASFEMVQKAASANIQILFAMSAVTSLALEL
HCHHHHHHHHHCCCHHHHCCCCEEEEEECCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHH
AEKSNITLIGFCRNGRATLYTHSYRLSGVNRGCLAKAI
HHCCCEEEEEEECCCCEEEEEEEEEECCCCCCHHHCCC
>Mature Secondary Structure
MEYHSHAVVTERKVTLLEQGQASELTDYVANEVRVALVYNGIAHTVMLASPENLEEFAIG
CCCCCCEEEEHHHHHEECCCCHHHHHHHHHHHEEEEEEECCHHHEEEEECCCCHHHHHHH
FTLSERIVSHVNEIKGVDLEFTPEGVLIQVEITQRCFMELKQQRRNMAGRTGCGLCGVAQ
HHHHHHHHHHHHHHCCCCEEECCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
LEEAVKPVIRVDSDARFNIDHLQLALEQIKENQHHFKLTGATHAAMGLDAEGQIIAAFED
HHHHHHHHEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCCEEEEHHH
IGRHIALDKLIGGFSMRKAERPVAVLLTSRASFEMVQKAASANIQILFAMSAVTSLALEL
HCHHHHHHHHHCCCHHHHCCCCEEEEEECCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHH
AEKSNITLIGFCRNGRATLYTHSYRLSGVNRGCLAKAI
HHCCCEEEEEEECCCCEEEEEEEEEECCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]