Definition | Borrelia afzelii PKo plasmid lp60-2, complete sequence. |
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Accession | NC_008565 |
Length | 59,804 |
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The map label for this gene is 117621689
Identifier: 117621689
GI number: 117621689
Start: 43297
End: 44079
Strand: Reverse
Name: 117621689
Synonym: BAPKO_2542
Alternate gene names: NA
Gene position: 44079-43297 (Counterclockwise)
Preceding gene: 117621690
Following gene: 117621688
Centisome position: 73.71
GC content: 28.61
Gene sequence:
>783_bases ATGAAATACTACATAATTATATGTATGTTTATTTTTCTATTTTTAAATGCTTGCAGTCTAGATTTTGATACCAAACACAA AGATATTAAATCTCCATCTAATAAGAAATCAAAGCCTAGCACAGAAGAAGGCCCTAGCAGAGAGGAATTAAAGCCTGGCA CAAAAGAAGGCCTAAATAAAGAAATAAAAAACAAACTACTTAATGGTTTAAAAAATTTAATAGAAACAGCTAACACACAT AAAGAAAAGTATATAAAAAGAATGGAAGAAGAGCCTTCTGATCAATATGGAATGCCTTTTAATGGTTTGAATTGGGGACC AGGCACAGAAGATATATCCAGCAATACTGTTAGATCTATAAACTATAGAAGATATACTTATACTCTTTTAAGTGATATTG ATACTAAGGAATTAAAGGAATTTGCAAATATTTTAACTCTGGCAACAGCATATAGTATTTACAACCTATTTAGCAGCCTT GGAGTCGATCTTGACATAGTAACTAATCGCTTATACCCCAAAAAAGATACTCTAGATAAACTAGACACTTCAGATTTACA GAAACTTAAAAATTCACTTGAAAAAATATTATCTATAATAAAAAATATCTCAGAAATGTCAAAACAACTCTTATTAGATT ATCAAAATGACACAAATCTTATAAAAACAGATGTTAATAAGCTTAAATCTCATGTAAGTGCTCTTTATAATCAATTTAAA GAAAAAGCTGAAGAATCAGACAAGCTACAAAAAACGGTCATATCATTAATAAAGACCCTTTAA
Upstream 100 bases:
>100_bases ATATTATATATAATATTAAAATAATTAAATTTAGTGTATAATATTAGAGTAATTAAATTTATTATTTACTAAAGACGGAA TTATATTCGGGGGAATATTT
Downstream 100 bases:
>100_bases AGGTTTGGCCTTTTAATTTATTAGCAATTTAAAGAAACGGTATATTTAAGGCTTCATATGGGAAAATATATTATCTATTT GAATAGATGTTATTAAAAAT
Product: hypothetical protein
Products: NA
Alternate protein names: Virulent Strain Associated Lipoprotein; Antigen P; Borrelia Virulent Strain Associated Lipoprotein; Surface Protein
Number of amino acids: Translated: 260; Mature: 260
Protein sequence:
>260_residues MKYYIIICMFIFLFLNACSLDFDTKHKDIKSPSNKKSKPSTEEGPSREELKPGTKEGLNKEIKNKLLNGLKNLIETANTH KEKYIKRMEEEPSDQYGMPFNGLNWGPGTEDISSNTVRSINYRRYTYTLLSDIDTKELKEFANILTLATAYSIYNLFSSL GVDLDIVTNRLYPKKDTLDKLDTSDLQKLKNSLEKILSIIKNISEMSKQLLLDYQNDTNLIKTDVNKLKSHVSALYNQFK EKAEESDKLQKTVISLIKTL
Sequences:
>Translated_260_residues MKYYIIICMFIFLFLNACSLDFDTKHKDIKSPSNKKSKPSTEEGPSREELKPGTKEGLNKEIKNKLLNGLKNLIETANTH KEKYIKRMEEEPSDQYGMPFNGLNWGPGTEDISSNTVRSINYRRYTYTLLSDIDTKELKEFANILTLATAYSIYNLFSSL GVDLDIVTNRLYPKKDTLDKLDTSDLQKLKNSLEKILSIIKNISEMSKQLLLDYQNDTNLIKTDVNKLKSHVSALYNQFK EKAEESDKLQKTVISLIKTL >Mature_260_residues MKYYIIICMFIFLFLNACSLDFDTKHKDIKSPSNKKSKPSTEEGPSREELKPGTKEGLNKEIKNKLLNGLKNLIETANTH KEKYIKRMEEEPSDQYGMPFNGLNWGPGTEDISSNTVRSINYRRYTYTLLSDIDTKELKEFANILTLATAYSIYNLFSSL GVDLDIVTNRLYPKKDTLDKLDTSDLQKLKNSLEKILSIIKNISEMSKQLLLDYQNDTNLIKTDVNKLKSHVSALYNQFK EKAEESDKLQKTVISLIKTL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29900; Mature: 29900
Theoretical pI: Translated: 9.08; Mature: 9.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYYIIICMFIFLFLNACSLDFDTKHKDIKSPSNKKSKPSTEEGPSREELKPGTKEGLNK CHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHH EIKNKLLNGLKNLIETANTHKEKYIKRMEEEPSDQYGMPFNGLNWGPGTEDISSNTVRSI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH NYRRYTYTLLSDIDTKELKEFANILTLATAYSIYNLFSSLGVDLDIVTNRLYPKKDTLDK HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHH LDTSDLQKLKNSLEKILSIIKNISEMSKQLLLDYQNDTNLIKTDVNKLKSHVSALYNQFK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH EKAEESDKLQKTVISLIKTL HHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure MKYYIIICMFIFLFLNACSLDFDTKHKDIKSPSNKKSKPSTEEGPSREELKPGTKEGLNK CHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHH EIKNKLLNGLKNLIETANTHKEKYIKRMEEEPSDQYGMPFNGLNWGPGTEDISSNTVRSI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH NYRRYTYTLLSDIDTKELKEFANILTLATAYSIYNLFSSLGVDLDIVTNRLYPKKDTLDK HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHH LDTSDLQKLKNSLEKILSIIKNISEMSKQLLLDYQNDTNLIKTDVNKLKSHVSALYNQFK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH EKAEESDKLQKTVISLIKTL HHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA