Definition | Borrelia afzelii PKo plasmid lp60-2, complete sequence. |
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Accession | NC_008565 |
Length | 59,804 |
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The map label for this gene is 117621688
Identifier: 117621688
GI number: 117621688
Start: 41188
End: 41796
Strand: Reverse
Name: 117621688
Synonym: BAPKO_2541
Alternate gene names: NA
Gene position: 41796-41188 (Counterclockwise)
Preceding gene: 117621689
Following gene: 117621685
Centisome position: 69.89
GC content: 26.44
Gene sequence:
>609_bases ATGAAATACTATATAATTACAAGTATATTTATTTTTCTATTTTTAAATGCTTGCAGTCTAGATTTTGATACTAAACACAA AGATATTAAATCTCCATCTAATAAGGAATTAAAGCTTGGCATAGAAGAAGACCTAAATAAAGAAATAAAAAACAAACTAC TTAATGATTTAAAAAATTTAATAGAAACAGCTAACGCACATAAAGAAAAGTATATAAAAATAATGGAAAAAGAACTTTCT AACCAATATGGAATGAATTTTACTAAGCTTGGTTGGGGACCGGGCAAAGAAAAGGTGTCTGACAATACTGAGAGATCTAT AAAATTTAGAAGACATACTTATACTCTTTTAAGTGCTATTGATATTAAGGAATTAAAGGAATTTGCAGATATTATGAAAC TATCGATAAAAAAAGACGTGATATACAACCTATTTAGCAGCCTTGGAGTCGATCTTGACATAGTAACTAATCGCTTATAC CCCAAAAAAGATACTCTAGATAAACTAGACACTTCAGATTTACAGAAACTTAAAAATTCACTTGAAAAAATATTATCTAT AATAAAAAATATCTCAGAAATGTCAAAACAACTCTTATTAGATTATTAA
Upstream 100 bases:
>100_bases AAAACTCAAAATGCTATAAAACTTCTAACATTAAATATATAATATTTAATTACTTTAATAGTATACACTAAAGACTCAAT TATACTCAAGGAGAGTATTT
Downstream 100 bases:
>100_bases AATGACACAAATCTTATAAAAACAGATGTTAATAAGCTTAAATCTCATGTAAGTACACTTTATAATCAATTTAAAGAAAA AACTGAAGAATCAGAAAAGC
Product: hypothetical protein
Products: NA
Alternate protein names: Virulent Strain Associated Lipoprotein; Antigen P; Borrelia Virulent Strain Associated Lipoprotein; Surface Protein
Number of amino acids: Translated: 202; Mature: 202
Protein sequence:
>202_residues MKYYIITSIFIFLFLNACSLDFDTKHKDIKSPSNKELKLGIEEDLNKEIKNKLLNDLKNLIETANAHKEKYIKIMEKELS NQYGMNFTKLGWGPGKEKVSDNTERSIKFRRHTYTLLSAIDIKELKEFADIMKLSIKKDVIYNLFSSLGVDLDIVTNRLY PKKDTLDKLDTSDLQKLKNSLEKILSIIKNISEMSKQLLLDY
Sequences:
>Translated_202_residues MKYYIITSIFIFLFLNACSLDFDTKHKDIKSPSNKELKLGIEEDLNKEIKNKLLNDLKNLIETANAHKEKYIKIMEKELS NQYGMNFTKLGWGPGKEKVSDNTERSIKFRRHTYTLLSAIDIKELKEFADIMKLSIKKDVIYNLFSSLGVDLDIVTNRLY PKKDTLDKLDTSDLQKLKNSLEKILSIIKNISEMSKQLLLDY >Mature_202_residues MKYYIITSIFIFLFLNACSLDFDTKHKDIKSPSNKELKLGIEEDLNKEIKNKLLNDLKNLIETANAHKEKYIKIMEKELS NQYGMNFTKLGWGPGKEKVSDNTERSIKFRRHTYTLLSAIDIKELKEFADIMKLSIKKDVIYNLFSSLGVDLDIVTNRLY PKKDTLDKLDTSDLQKLKNSLEKILSIIKNISEMSKQLLLDY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23535; Mature: 23535
Theoretical pI: Translated: 9.52; Mature: 9.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYYIITSIFIFLFLNACSLDFDTKHKDIKSPSNKELKLGIEEDLNKEIKNKLLNDLKNL CCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHH IETANAHKEKYIKIMEKELSNQYGMNFTKLGWGPGKEKVSDNTERSIKFRRHTYTLLSAI HHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHCCCHHHHHHHHHHHHHHHHHH DIKELKEFADIMKLSIKKDVIYNLFSSLGVDLDIVTNRLYPKKDTLDKLDTSDLQKLKNS HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHCCHHHHHHHHHH LEKILSIIKNISEMSKQLLLDY HHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKYYIITSIFIFLFLNACSLDFDTKHKDIKSPSNKELKLGIEEDLNKEIKNKLLNDLKNL CCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHH IETANAHKEKYIKIMEKELSNQYGMNFTKLGWGPGKEKVSDNTERSIKFRRHTYTLLSAI HHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHCCCHHHHHHHHHHHHHHHHHH DIKELKEFADIMKLSIKKDVIYNLFSSLGVDLDIVTNRLYPKKDTLDKLDTSDLQKLKNS HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHCCHHHHHHHHHH LEKILSIIKNISEMSKQLLLDY HHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA